Genomic Location: contig_18:2815599...2927084
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families
| CDS |
| FUN_020119-T1 |
| Transcript |
| FUN_020119-T1 |
| Protein |
| FUN_020119-T1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002128 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF18198 all species → | AAA_lid_11 | Dynein heavy chain AAA lid domain | Domain | Interproscan |
| PF18199 all species → | Dynein_C | Dynein heavy chain C-terminal domain | Domain | Interproscan |
| PF03028 all species → | Dynein_heavy | Dynein heavy chain region D6 P-loop domain | Domain | Interproscan |
| PF08385 all species → | DHC_N1 | Dynein heavy chain, N-terminal region 1 | Family | Interproscan |
| PF12777 all species → | MT | Microtubule-binding stalk of dynein motor | Domain | Interproscan |
| PF12781 all species → | AAA_9 | ATP-binding dynein motor region | Domain | Interproscan |
| PF12775 all species → | AAA_7 | P-loop containing dynein motor region | Domain | Interproscan |
| PF08393 all species → | DHC_N2 | Dynein heavy chain, N-terminal region 2 | Family | Interproscan |
| PF12780 all species → | AAA_8 | P-loop containing dynein motor region D4 | Domain | Interproscan |
| PF21264 all species → | DYNC2H1_AAA_dom | Cytoplasmic dynein 2 heavy chain 1, AAA+ ATPase domain | Domain | Interproscan |
| PF12774 all species → | AAA_6 | Hydrolytic ATP binding site of dynein motor region | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR041658 all species → | Domain | Dynein heavy chain AAA lid domain | Interproscan |
| IPR041228 all species → | Domain | Dynein heavy chain, C-terminal domain | Interproscan |
| IPR004273 all species → | Domain | Dynein heavy chain region D6 P-loop domain | Interproscan |
| IPR013594 all species → | Domain | Dynein heavy chain, tail | Interproscan |
| IPR042219 all species → | Homologous_superfamily | Dynein heavy chain AAA lid domain superfamily | Interproscan |
| IPR024743 all species → | Domain | Dynein heavy chain, coiled coil stalk | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR042228 all species → | Homologous_superfamily | Dynein heavy chain, linker, subdomain 3 | Interproscan |
| IPR035706 all species → | Domain | Dynein heavy chain, ATP-binding dynein motor region | Interproscan |
| IPR043160 all species → | Homologous_superfamily | Dynein heavy chain, C-terminal domain, barrel region | Interproscan |
| IPR026983 all species → | Family | Dynein heavy chain | Interproscan |
| IPR043157 all species → | Homologous_superfamily | Dynein heavy chain, AAA1 domain, small subdomain | Interproscan |
| IPR013602 all species → | Domain | Dynein heavy chain, linker | Interproscan |
| IPR024317 all species → | Domain | Dynein heavy chain, AAA module D4 | Interproscan |
| IPR042222 all species → | Homologous_superfamily | Dynein heavy chain, domain 2, N-terminal | Interproscan |
| IPR049400 all species → | Domain | Cytoplasmic dynein 2 heavy chain 1, AAA+ ATPase domain | Interproscan |
| IPR035699 all species → | Domain | Dynein heavy chain, hydrolytic ATP-binding dynein motor region | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45703 all species → | DYNEIN HEAVY CHAIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0007018 all species → | Biological Process | microtubule-based movement | Interproscan |
| GO:0008569 all species → | Molecular Function | minus-end-directed microtubule motor activity | Interproscan |
| GO:0030286 all species → | Cellular Component | dynein complex | Interproscan |
| GO:0045505 all species → | Molecular Function | dynein intermediate chain binding | Interproscan |
| GO:0051959 all species → | Molecular Function | dynein light intermediate chain binding | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K10414 | DYNC2H, DNCH2; dynein cytoplasmic 2 heavy chain | - | Cytoskeleton proteins | ko04812 | deepkoala |
Transcript abundance of FUN_020119-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| holobiont · low.pH_high.temp | 20 | 0 | 0.00 | 0.00 | |
| holobiont · low.pH Control.temp | 20 | 1 | 2.27 | 45.38 | |
| holobiont · control.pH_high.temp | 20 | 4 | 3.50 | 41.03 | |
| holobiont · control.pH Control.temp | 19 | 1 | 0.57 | 10.84 | |
| Whole organism | 4 | 4 | 22.52 | 26.61 | |
| unannotated | 1 | 1 | 6.58 | 6.58 | |
| live coral tissue/skeleton | 1 | 1 | 11.18 | 11.18 |
Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM,
StringTie quantification over 85 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
