Gene detail

Detailed information of FUN_020145-T1 in Colpophyllia natans

Genomic Location: contig_35:3491033...3510458
NR annotation: XP_020601019.1, semaphorin-5B-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

FUN_020145-T1

ATGACTGCATTGTGCGGGCGATATTTGCTCTTTCTCGTTTATTTTTCTATCTTTCCTGCTTGGAGCGACGAATCATCGAATGCAGATTATTCGCGTGCGGCGAGGACATCATCCGGAGCGATCAAGAACCATTTAGAGACACTGGACACAAGAGGAATTGAAAGTGGAAGTTACTCATTGCTGACAATTGATGGAAAGTACAATCAACTTATTGTCGGAGCAAAGGATAACACATTCCTAGTGGATTTAGAGAATATCCGTAACTTCAAGtCTTGGAATTTAACAGAGTCATCCAGTGGTAGTGCATGTGACAAAACACAGGATGGTCCATGCCACAACTTTGTCAAGATAATTTTACCTTTCAATGATAGAATTTTTCTCTGCTGGACTGGAAAACAAATGACTGGCTGTGCTTGGAGAAATAGGACAAACTTAAGTGCTGTTTCAGGCAGTGATACGAAAGGAAATGTATTCACATCTGATGTGGAGTATTCCAGCAGTCCAGATCAGAATGACACAGCCATCATAACAGAACATGGCACAATCTTTACAGGGACGATAAACCCATATTCAGGAAAGTCAATGATTTACAGCAGAAGTTTACAACCAGGACGTTTTGAAATCTTCACATCCTTGGTGGATCAAAGTGACTTCTACACAGATGTGCACTTTGTAAAAAGTTTCAACATTGGCCATTATGTTTACTTCTTTTTCCGTGAACGGACATTGGAATGTTCCAGTTGTGGAAAGCTCAAAATCTCCAGAGTGGCCAGGATTTGTAAGGGAGACTATGGTGGTCTGTATAGCCTTAGAAGAAATTTTGTCACCTTTCAGAAGGCAAAACTGGTTTGTTCAGATGGAGCGGATTTTCCATTGAATTTCAATGAAATCCagGATGTTTGGTGGGATGAACACGCCAACTCATTTTATGCTATTTTTCTTTCTCATCCCAATGGCCCGCCATCATCAGCTATTTGTATGTACAATTTGTCTGATATCAATCACGTTTTTGATGAAAGCTCTTTCAAGTCATATGACAATCAAGCCAAACAGTGGATCACGGTAGAAAACCATCACAAGGAGTATTTCAAGGATTGTAAAGTGAATCAAAAGTACATTGATCCCGCGAGTAGTGCAAGTGTCCCAGATGGAATGATGGCGACAACGAAAATGAAACGCAGTGTTTATCGACAGTTGATGCATGATCCGCTAATGGAAGATCCAGTTCAACCCATTAGTTTTGATGCCCAATCTAAGAAAGTGTCAAGAGCTTTGTTCATTAAGGATGGAATCAGGATGACAGGCATTGCTGTGGATAAAGTTGGTAAACACACAGTTGTGTACACATCAACAGACAGAGGATCTGTACTTAAAATTTCAAGGCCTGCTGGTGTACATCAACCATGTCTACTCAATGAATTCAATATTTTCCCGGGTGACAGGAAAGAAGTCATCAAAGCAACAACGATTGATACCACCCGGcattttctcTACCTGGGTTCAGAAACAGCACTTACAAAGCTGAGTTTAGAGCAGTGCAGTAGTTACGACCGTCACAGTTCTTGTACATCTGCGGCTgatccttactgcgcatggGACGATAAAGCAAACCGCTGTGTTTCAATTCTTTCTTATGGAGACCCAAGCAAACTGACACAAGACTTGAGTACTTGTCCAAAGATGGCAGAGGATGACATTGAGTGGTCTCCCTGGAAAAGCTGCATTCAGAGTGATGGTAATCTTTGTCGTTGTCAAGTGCGGCCATGTCAAAACAGGCAAAACAGGTCCTGTGAGGGTGGTTTTGAATTCCGACTTGAAAACTGTACAGTGGACATGACTGTAGGGTGGGAGGGCAAAGAAGCATGGGAAATGTTTGGAGTGCAGCATGGTAATTGGAGTGTGTGGGGAAATTGGAGCGAGTGTTCAGCGGAGGCATGGGCCGGAGTAAGACACCGGACACGGACCTGCACCGACCCAGTCCCCAGGAGAGGAGGAAGACCATGTGTGGGACAGTCAGTACAGTACGAGCCCTGCAGCTTAGGATTAGAAGTGAAGGCAAAAGGCGTGTCCACAAATCTAACAAGAGTCTTGAACCCAAAAGTGAACATGGCTGTGCAGTTCAATGTGGCATGTGAAGCCATAGGATATAAGATAACTGACATACGAGTGCAGATATCAAGCAAGACTACTGACTGTGAGAGAGAACCCCATCTCTGCGGAGACGGAGAGTGGGGTAGGTGGAGCGATTGGAGCCAGTGTACTGTGGAAGGATTTCAGATAAGGAGAAGGAAATGCAAAGAAGAGCCTTGTGTCGGGGAAAggatacaagaaagaaaatgccaACCGACAACATCTGATAACTGCAAAGGTGACTTGAATAAGGGCTTGGATGACTGGGCTGAATGGTCTGCTTGCGAGTGCAAGCACGAGCTTGACCTACCTGAGCGGAGTGGTGTGAGGTCCCGCATTCGCAAGTGCCGCAGGGAGTGCCCCACTGTATCATCTTGTCCCAGTACTGTTCAGTATGAAACATGCAGTTGTCAACCTGGCGATGTGGAAATGCAACGAGGACCTGAAGCCAATGAGGGATCAAACATGGAAATAGGTCACGTGATTGGAGCCGCGATAGCTGGCTGTGTGTTGACCGTCATTCTTGCTTTGACTTTGTACTACTGCAGGTATCGGAAAAAACAGTTCAATGTTTCCAAAACCGAAGAAACCAGCCTTCATGACACCTCCAGCCACAGTAAATACTCGACAATTCCTAGAGGGAACGGTGCTCCGAGAAGAGGAACGCCTTCCACATCCAGCAGCCACAGTACGGCAAGTAAGGACAGTGACAACAAAAGGAGAAAGACGTCTTCGCCTTTAAAGATGTTTCGACTATTCCGGAAACATCACAGCCCCGCGGAAGCAGTATAG

Transcript

FUN_020145-T1

Protein

Uniprot

Uniprot term	Description
Q62217	Semaphorin-5A OS=Mus musculus OX=10090 GN=Sema5a PE=2 SV=1
Q24323	Semaphorin-2A OS=Drosophila melanogaster OX=7227 GN=Sema2a PE=1 SV=2
Q9C0C4	Semaphorin-4C OS=Homo sapiens OX=9606 GN=SEMA4C PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00090	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan
PF01403	Sema	Sema domain	Repeat	Interproscan
PF01437	PSI	Plexin repeat	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016201	Domain	PSI domain	Interproscan
IPR000884	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR001627	Domain	Sema domain	Interproscan
IPR036352	Homologous_superfamily	Sema domain superfamily	Interproscan
IPR036383	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR002165	Repeat	Plexin repeat	Interproscan
IPR027231	Family	Semaphorin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11036	SEMAPHORIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0001755	Biological Process	neural crest cell migration	Interproscan
GO:0030215	Molecular Function	semaphorin receptor binding	Interproscan
GO:0030335	Biological Process	positive regulation of cell migration	Interproscan
GO:0045499	Molecular Function	chemorepellent activity	Interproscan
GO:0048843	Biological Process	negative regulation of axon extension involved in axon guidance	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06841	SEMA5; semaphorin 5	-	Axon guidance	ko04360	deepkoala