Detailed information of FUN_020207-T1 in Colpophyllia natans

Genomic Location: contig_35:4207309...4250410
NR annotation: XP_020611985.1, WD repeat-containing protein mio-like [Orbicella faveolata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q8VE19GATOR2 complex protein MIOS OS=Mus musculus OX=10090 GN=Mios PE=1 SV=2
A4QNS7GATOR2 complex protein MIOS-B OS=Xenopus laevis OX=8355 GN=mios-b PE=2 SV=1
Q9NXC5GATOR2 complex protein MIOS OS=Homo sapiens OX=9606 GN=MIOS PE=1 SV=2
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 adaptor Cullin RING|CDC20

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF21719MIOS_a-solMIOS, alpha-solenoidRepeatInterproscan
PF17034zinc_ribbon_16Zinc-ribbon like familyFamilyInterproscan
PF21720MIOS_WD40MIOS, WD40 repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR037593FamilyMIOS/Sea4Interproscan
IPR049092DomainMIOS-like, alpha-solenoid domainInterproscan
IPR031488DomainGATOR2 complex protein MIO, zinc-ribbon like domainInterproscan
IPR001680RepeatWD40 repeatInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR16453WD40 DOMAIN-CONTAINING PROTEIN MIO FAMILY MEMBERInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0034198Biological Processcellular response to amino acid starvationInterproscan
GO:1904263Biological Processpositive regulation of TORC1 signalingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K20407MIOS, MIO, SEA4; SEA/GATOR complex protein SEA4/MIOS-Membrane traffickingko04131deepkoala

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