Gene detail

Detailed information of FUN_020219-T1 in Colpophyllia natans

Genomic Location: contig_36:81680...85780
NR annotation: XP_020605016.1, ras-like protein 1 isoform X2 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

FUN_020219-T1

ATTTTTTATTTCGATGTCTATTTACTACTTCTAGATCTCTGGGTAATTTGCTTTTGACACCGAactaaagtaattttaaaaaacaatagtaGTCGTACTACTAAAAGTTCTGCTTTTGTCGTTATATTTTTTAGAGGACAACTACGAAACTGATATCGAAGTGGATGGGTGCCCGTTAAAAGTTGAACTAATCGACACGGCAGGAAATGACGTGTTCCGGCGAATGAGGGATCAATATATTAAGAGTGGGGACGGCTTTCTGCTGGTTTATGCCATCACCGACCACTTGAGCTCCCACTCAATCACAGCTTTTCATGAACAAATCATCGCTGCTAGAggagaaaaagacaaaattatACCACAAATACCCATAGTCTTGGTTGGAAACAAGTGCGACTTAGAGGATGACCGAGAGGTTTCATATTTAGACGGAAAGAAAATCGCTGCTACCTTTTCCTGTCCGTTTTTTGAGACTTCCGCCAAGAACGACATTGGTGTCGATGAAGTATTCATCAATCTTGCCCGACAAATGAAAGAGGCAAGAGCTGACTCGGTTCGAAAAGCCTTCATAAGGGACCGACGTAGATTCTCTCTACGAAATATGTCTTTAAGGGAGAGAAAGTGCAAGGAGAAACTGCAGGCTTTGAGGCCGAACGAAACGGCGTCCAATGTCCCAAGACGGAGACGGAGAAGTATGTTACGAGGATTTGTATGTGGAGCAGAAAATCTTGGTGCCACTGATATTTAGAGGACTTATATCCAGATAACAATCAAAATTGTAATTCATGTTGACTGGGTACTGTTGTATGAGCACCCCACCAATAGGTGCAAAATAGATGTCAAGGTAAAATGTGGTCGTTCTGCCTTTGGGAGACACGGTCTGAACGGAAGAGGCGTTGGAATGCCTAAATGTTAAAATTGCCTGTTTGTTGGCCCTAATAAATTCTGCCAAATTGGTTCCTTAGGAAAGCTTGGCGATGGTCTCTAAAGAATCCACCCCGACCATCTTCAATTCATGGCGTAGGGTTGTATATACCACAAGGTGAAAATTAACTGTCGATCAAGGAGTACTTATTGTTTGAAATCGATTTCTTCTGCTAAGACCTCGTGTATAAGCCGATCAGAAGAAACATACACTTCGAAATTAAATCTATATCAAGTATGTAAAGTTCACCAATACGAAATCCAGCATAATGTACACGGATTCATTAAATATATTTGTGCTCGACTTAAATATAATctgtaaaattataaattgttttttaaagacTTTGAAAGCGTTAAAAACTTGCAGTATATTTAACTGTTACTGAGTTATTATTTCACGAAAAGCGTCCGTTCgatattgtaatatttttttttcgaggcAATTGTAAGCATGATAGGCATTTGGGAAATTTTACTATCTACCATTACAAACACGTCTAGGCTTACACCACACCACGTTTGATATAGTAACTATTTGACCTTCTTTTCTGAACTCTCATTCCTTTAAAGTTCTTTAAAGCGGGTTCTTTGTTTCTGTGTACCTTGAAGTTTGATGCTGCAATGATTACGCCCCTCAAATGGGAATTCTGCTATCTTTCGATAGCGGGATCATACAAACACGCTTGCGAGCTCAGTGTAAGTTGGCACGTCCCATTCGACCTTGGTTCAAAGTACTCACAGATAGCATCATTACGTTCCACGGGATGGGTAGCTTGGTTAGATCAAGTCTTAATCTGGAATCTGCAGGTCATATACTGTATATTTGTGGCGTTCCAGCCGTTTTCATTTTACATGAAACTTGAGGAAGTCATTTGTGGCGGTCTCATTGGAGAGCAACTAACACTTGGACGGTATCTACGTTCACTTCATAAGAATGAGTGTCAGGGTATTACTATTACTACGTGGCAACAGGCTGAATAGGTGTTGTCGAACTTTCCTCAGATATCTCTTAATCTACACCTTCGACCTCTCTTTCTAGACCCAGCGTCCTCTACGACGAGTCAGTTCCCTGTACATCAGTTGCGGCAACtgcttgatttcttttcttctctctcTCCCATGGATGTGAGTCGCGACAAGGACGATGATCCCGACAAGAACTACTGACAGCATTATCCATCCTCCAACCTGCAATTATTAAATTCCAGAcatgaatatatttgtatatgaAAGATATTAAACTTGTGAACACCCGGGGAAAAATCTGTGAATAAAAAACTatatttttgtaactttttcaAAATCTGGGTCGGTCGAGCTTtagaaaacacaaaattatatgGGGATGACTCGCATAAATTGACGAAAAAAAAACGAGCACTATCGTAAGTCAAAGACTGTTTGATCCCTGAAATTTACCAAATGACCGCTTaatgttgaataataacattgTTGTTTACATAACAATTTTGAAGCAAGACTTGTATTACACTTATGTTAATATGGTCTTGTTAGATCACCTGAGAGCGCGCTTGCATATTATTCACCATTGACTGGTGATAACTAACAAAGAgagccaaaaaaagaaaaacgccactAGAACTATAATTATTCTTTGAATCTGCTGTATGACTTTTTTGTATGTACATTTTCAAATTGACTTTCTGATGAAACCATTACACGATTATACCgttaaaatgttttttgaatattaaaaaaattaaaaatatcaagTTCTGAAATCAA

Protein

Uniprot

Uniprot term	Description
P34729	Ras-like protein 1 OS=Physarum polycephalum OX=5791 GN=RAS1 PE=2 SV=1
P22278	Ras-like protein 1 OS=Mucor circinelloides f. lusitanicus OX=29924 GN=RAS1 PE=2 SV=1
Q06AU2	Ras-related protein Rap-2a OS=Sus scrofa OX=9823 GN=RAP2A PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00071	Ras	Ras family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001806	Family	Small GTPase	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR020849	Family	Small GTPase, Ras-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24070	RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0019003	Molecular Function	GDP binding	Interproscan