Detailed information of FUN_020406-T1 in Siderastrea siderea

Genomic Location: contig_18:7202260...7236221
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00397
all species →
WWWW domainDomainInterproscan
PF00168
all species →
C2C2 domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001202
all species →
DomainWW domainInterproscan
IPR051105
all species →
FamilyWWC/KIBRA Hippo Pathway RegulatorsInterproscan
IPR036020
all species →
Homologous_superfamilyWW domain superfamilyInterproscan
IPR000008
all species →
DomainC2 domainInterproscan
IPR035892
all species →
Homologous_superfamilyC2 domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14791
all species →
BOMB/KIRA PROTEINSInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0005737
all species →
Cellular ComponentcytoplasmInterproscan
GO:0006355
all species →
Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0016477
all species →
Biological Processcell migrationInterproscan
GO:0019900
all species →
Molecular Functionkinase bindingInterproscan
GO:0035330
all species →
Biological Processregulation of hippo signalingInterproscan
GO:0046621
all species →
Biological Processnegative regulation of organ growthInterproscan
GO:0060090
all species →
Molecular Functionmolecular adaptor activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K16685WWC1; protein KIBRA-Hippo signaling pathway - multiple speciesko04392deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_020406-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
8TPM > 0
7Conditions
32.8Max TPM
2.1Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 2 0.75 9.41
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 4 28.97 32.84
unannotated 1 1 20.58 20.58
live coral tissue/skeleton 1 1 27.68 27.68

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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