Gene detail

Detailed information of FUN_020613-T1 in Colpophyllia natans

Genomic Location: contig_37:434602...446422
NR annotation: XP_020626338.1, uncharacterized protein LOC110063680 isoform X1 [Orbicella faveolata]
Species abbreviation CNATA · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_020613-T1

ATGACTCGATCCCCTTGTAGTGAACTGTGCGTGAACAAAATGGCAGACAGCAAGCGAAAAAGGAGGAAAGGAGGTAAAGAGGGCGACAAGGCGAAGAGCGGCGAAAGTTTGCAAGAAGCCTTCAAGAGGTTTCGCAAGAAAAGACAGAAAGCTATACGTTTATCCAAAGAAGTCAACAAGGAAGCCATGAAGTGGAGAGCAGATCCTATAAGAATGAACAATCTCAGAATTAAATTTGTGGAGCAGTGTAAGCTGTACTTTGGTGTACCTTATGCCAAGAAATACCAGCAACCAGGAACTGCAGGGTTCAATGCACCCCTCTTTCTTGATTGTTGTGGTTTGATCAGGAAAGTACTCAGAGATCTTAAGGAGGATTTTGGTTTTGTAATTGGCCCATGGAATCAAGCTTACATGTTTGATACACTTCCGTTAGATGTGCAGAAGACTGAAGACCTGCAACCTGGAGATTTGGTGTTTGTTTCAGGAATATACCACAATCCAAAGTCCAAAAAACAGCGTCACAACATGGTCCATGTTGAAGTCTGGGCAGGAGATGGAGAAAAGACCATTGGCGCAAGATGGCAGCGAGGAAAGGTTCAGTACCATGACTCGTACAAATTCAATGCTAAGAGCTACCACAGTATGCAGTATCACTTTAAATCCATTGACACATGGCTCATGGGGATCTGTCAGAGTCACTGCGCAGAACATTCCTGGAAACGATCAAAGTACCAGCCCGGGAAAAAGTCTATCTTTGCTGAGAATCCACAAAATGGGACTCAAGATCAAGATGCAGAACAAGAAGATGAAGAAGTTGGCAGCCAAGTAAATGAAGATGAGAAAAGCAACTTGTCTGTTGAGGGTAGCTCAGGAAAGGATGTCCATTGTGATGAGCTTGATCAGGAGAAGAGTAATCGGGAAATTGTTGCCCAACATTCCGCTGCATCAAACACAAACTGCTCTGTTGTTCAAGAGCTATCTAGTGACAAAAATGCTGCTACTGATCATCAGTCCCCAACTGCAACAACTTCGCAATATATCCAAACAAGCTTTGATAGCCTTGATGAATGTGTCAGCTGGCTGTTATCAACAATAAGCTTGGACCTTGAAAGTGAATTCTATGACACAAGTTGTAGTCCTAGTGGACTCAAGCTAGGAAGTTCTCAATGGATAGAAGCTGGTTCTTCAAACAACCAGGACAAAGGCTTTGTGGATGAAATAGTGGAGAATCCCTCTGCTAATCAAAGAATGGTAGAAGCTATAAGTTTGTCAGAACTTGAAACAAGTTGTCAATGTCCTCAATGTTGGCGCATAGACATGAGCTGCATACATCAAGGCAGTAACTATGCCAGTACGGAAGACGATGATGAAAAATGTCGAAGCATTGAAGACTGTAAAGAATTTTCTTCGTCATTGGagtgttttgattttgttcACTGTGGCATGAGTAGTGATGACGTTCCAATCAACCAGTGTCCCAACAACTCAAGCAGTAGTGGTAGACGTAAGTCTAGGTCTGTGTCTCCCTCAAAGGCAGCAAGAAATGGAAAAGTCTCTGGGGGTAGCTCGTCATCTGGTGATGGAAAAGGAAGTGGCAATGAAAAGAACGGCAATAACAAAGACTCCTCCAGAAGAAACTTACACAATGGTGCTAGGTCAGTTAGCCATGTGAATGGAAGACAGCCAAGCTTCTTCATCGGAGGAGGAAATGGAAACTGGATGATTGAATCCACTTTATTCTCACTTGGCTGGTCCAAGATTGAGGACAAGATGGACGAGTCATTCAAATTAAAATGGGTGGAGTGCAAGAGCCAGATTAACTATGACAGCTTCAGAGATGGAGAACAGCTAGTGAACCACATCTCCAACATCAACCTGCTGACCACAAAGCTGGGTCTCCTGTGCACTTTACAAGAATATCAGCGAGTCCAAGAGAAAATGGCTAAAACCAAGCCGAAAATTTCTATAAATGAATTTGTTCCGGAGACTTACAAGCTGATGAATGCAACTGAGAAAGTGAAGTTTGTCAACGATATTTATAAAGATGGCGAGATTTGGATTTGCAAACCGACGGGGATGAATCAAGGAAAGGGCATTTACCTTGTAAACAGCAGAGAGCAGCTGATTGAAAAGCTGAACATGAATGGAGGTGATGACCCTAGCGCCAGACGAAGTCAGGTGCGGCCTCCACAAGGACGGGTCATACAGAGATATGTGCTGAATCCTCTTCTGTTGAATGGTTGTAAGTTTGATGTTCGCACGTACATGTTGATTGCAAGTACCACGCCGTACATTGTATTCTATCATCCGGGATATGTGCGACTGTCGTGTGTCCCGTATACGCCCTACACTCAGGATGCCGCTGGTCTGCATGCGCATCTCACCAATCAGTATGTTCAAAAGAAGCACCCTATGTACTCATCCATGAAGGAAGATACTGTTTGGAGCTTCGAGCGCCTGCAGGCGTACATCGATGAGAAGTATGCCAAGGAAAAAGAACTGCCCGAAAATTGGGTTTTTACAACCTTTACGAAACGTATGCACCAGATAATGACGACATGTTTTCACAGCGTTCGTCAGAAGCTTCACAGGAGAACTGGAACTTTTGATTTGCTGGGATTCGACTTTCTTATTGACGAAGACTTCAAGGTTTGGCTACTGGAAGTGAACATTAACCCCGCGCTCCACACCAACTGCCAGGTTCTAATGGATCTTCTGCCCGGAGTCGTCGACGAGACACTCAAACTTGTGATCGAGATTTCAGACAAGACCAAGAAAAAGCGACCGCTCTTCCCATTGGAAAACCAGAAGGGCTTTCAGCTATTGTATAACGGAGTAGGCAAATAG

Transcript

FUN_020613-T1

GTTAACATTGCCCTGGTTACCGAACACGCTGAAAACAAACGGTTCTGGTGGTCGCTGTGATTGCTCTTCATGCATTTGCCGTAATATTTACTCGTTAATTTGGCTGAAGGACCGGAAATTTACTTAACTTTAACTTTGTCGTTTTGCCATGACTCGATCCCCTTGTAGTGAACTGTGCGTGAACAAAATGGCAGACAGCAAGCGAAAAAGGAGGAAAGGAGGTAAAGAGGGCGACAAGGCGAAGAGCGGCGAAAGTTTGCAAGAAGCCTTCAAGAGGTTTCGCAAGAAAAGACAGAAAGCTATACGTTTATCCAAAGAAGTCAACAAGGAAGCCATGAAGTGGAGAGCAGATCCTATAAGAATGAACAATCTCAGAATTAAATTTGTGGAGCAGTGTAAGCTGTACTTTGGTGTACCTTATGCCAAGAAATACCAGCAACCAGGAACTGCAGGGTTCAATGCACCCCTCTTTCTTGATTGTTGTGGTTTGATCAGGAAAGTACTCAGAGATCTTAAGGAGGATTTTGGTTTTGTAATTGGCCCATGGAATCAAGCTTACATGTTTGATACACTTCCGTTAGATGTGCAGAAGACTGAAGACCTGCAACCTGGAGATTTGGTGTTTGTTTCAGGAATATACCACAATCCAAAGTCCAAAAAACAGCGTCACAACATGGTCCATGTTGAAGTCTGGGCAGGAGATGGAGAAAAGACCATTGGCGCAAGATGGCAGCGAGGAAAGGTTCAGTACCATGACTCGTACAAATTCAATGCTAAGAGCTACCACAGTATGCAGTATCACTTTAAATCCATTGACACATGGCTCATGGGGATCTGTCAGAGTCACTGCGCAGAACATTCCTGGAAACGATCAAAGTACCAGCCCGGGAAAAAGTCTATCTTTGCTGAGAATCCACAAAATGGGACTCAAGATCAAGATGCAGAACAAGAAGATGAAGAAGTTGGCAGCCAAGTAAATGAAGATGAGAAAAGCAACTTGTCTGTTGAGGGTAGCTCAGGAAAGGATGTCCATTGTGATGAGCTTGATCAGGAGAAGAGTAATCGGGAAATTGTTGCCCAACATTCCGCTGCATCAAACACAAACTGCTCTGTTGTTCAAGAGCTATCTAGTGACAAAAATGCTGCTACTGATCATCAGTCCCCAACTGCAACAACTTCGCAATATATCCAAACAAGCTTTGATAGCCTTGATGAATGTGTCAGCTGGCTGTTATCAACAATAAGCTTGGACCTTGAAAGTGAATTCTATGACACAAGTTGTAGTCCTAGTGGACTCAAGCTAGGAAGTTCTCAATGGATAGAAGCTGGTTCTTCAAACAACCAGGACAAAGGCTTTGTGGATGAAATAGTGGAGAATCCCTCTGCTAATCAAAGAATGGTAGAAGCTATAAGTTTGTCAGAACTTGAAACAAGTTGTCAATGTCCTCAATGTTGGCGCATAGACATGAGCTGCATACATCAAGGCAGTAACTATGCCAGTACGGAAGACGATGATGAAAAATGTCGAAGCATTGAAGACTGTAAAGAATTTTCTTCGTCATTGGagtgttttgattttgttcACTGTGGCATGAGTAGTGATGACGTTCCAATCAACCAGTGTCCCAACAACTCAAGCAGTAGTGGTAGACGTAAGTCTAGGTCTGTGTCTCCCTCAAAGGCAGCAAGAAATGGAAAAGTCTCTGGGGGTAGCTCGTCATCTGGTGATGGAAAAGGAAGTGGCAATGAAAAGAACGGCAATAACAAAGACTCCTCCAGAAGAAACTTACACAATGGTGCTAGGTCAGTTAGCCATGTGAATGGAAGACAGCCAAGCTTCTTCATCGGAGGAGGAAATGGAAACTGGATGATTGAATCCACTTTATTCTCACTTGGCTGGTCCAAGATTGAGGACAAGATGGACGAGTCATTCAAATTAAAATGGGTGGAGTGCAAGAGCCAGATTAACTATGACAGCTTCAGAGATGGAGAACAGCTAGTGAACCACATCTCCAACATCAACCTGCTGACCACAAAGCTGGGTCTCCTGTGCACTTTACAAGAATATCAGCGAGTCCAAGAGAAAATGGCTAAAACCAAGCCGAAAATTTCTATAAATGAATTTGTTCCGGAGACTTACAAGCTGATGAATGCAACTGAGAAAGTGAAGTTTGTCAACGATATTTATAAAGATGGCGAGATTTGGATTTGCAAACCGACGGGGATGAATCAAGGAAAGGGCATTTACCTTGTAAACAGCAGAGAGCAGCTGATTGAAAAGCTGAACATGAATGGAGGTGATGACCCTAGCGCCAGACGAAGTCAGGTGCGGCCTCCACAAGGACGGGTCATACAGAGATATGTGCTGAATCCTCTTCTGTTGAATGGTTGTAAGTTTGATGTTCGCACGTACATGTTGATTGCAAGTACCACGCCGTACATTGTATTCTATCATCCGGGATATGTGCGACTGTCGTGTGTCCCGTATACGCCCTACACTCAGGATGCCGCTGGTCTGCATGCGCATCTCACCAATCAGTATGTTCAAAAGAAGCACCCTATGTACTCATCCATGAAGGAAGATACTGTTTGGAGCTTCGAGCGCCTGCAGGCGTACATCGATGAGAAGTATGCCAAGGAAAAAGAACTGCCCGAAAATTGGGTTTTTACAACCTTTACGAAACGTATGCACCAGATAATGACGACATGTTTTCACAGCGTTCGTCAGAAGCTTCACAGGAGAACTGGAACTTTTGATTTGCTGGGATTCGACTTTCTTATTGACGAAGACTTCAAGGTTTGGCTACTGGAAGTGAACATTAACCCCGCGCTCCACACCAACTGCCAGGTTCTAATGGATCTTCTGCCCGGAGTCGTCGACGAGACACTCAAACTTGTGATCGAGATTTCAGACAAGACCAAGAAAAAGCGACCGCTCTTCCCATTGGAAAACCAGAAGGGCTTTCAGCTATTGTATAACGGAGTAGGCAAATAGAACAAACATCTTGTGTCCTCTACAGTGAACAGAACGGCGAAACGAACCTCCCTGGCAAGAACCATAAGAAAAGACGACAAAGGAGGGTAGTGAGATGACTGTAAAGCACGTGACGAGTGCGAGCCAATCAGTTTTTGGCGTCAATAAAAGTGACATCGctggaaccaatcagattcctCCAAGAAGTGCAATGAACGTGAAAAACCTGATTAGGAGTTGTGTTGATCGATAGAGTTCGATCAAGATTGTCTTTTACAAAATTGTAATGATTCAGTTGTAATCAAGCATTGAAGCCCACAGCGTGTTTTCCAAAGAACAAAGGCTCATAGGCATTCTAGAGGGAGAGTGTCGAAGTAAATAGCCCtgttcacggttagtttttctcgtttacattacaatgtaatccaacgtgtgtcCGAGGCAATTTCGgattatattgtgatgcaaatgagaGAAGTTAaacgtgaaaagggctattaaTTGGGTGCATATATTCTtaggtttttaatagttttagcATCGAAATGACCAAGGAAAAAAGTGTTATGCCGACAATGTACAAGAAGTATAACAAGATGTATAGAAATATAATCTCGATGAGTATCGCGAGTGACAAAGGTTCTTACGGCTTTGGAATTAGATTTCAGTTAAAAAATTTGGCTCCGGTTCACACAAATACTGTAGTTCTCGTTGATTCAccctcgtgtttctatttacccccgcagggttttggcccagaggccaaaacccgaggaggcatcattgtagtccgcgcgtaaatagaagaagtacttacagtatcaatatacagtcgatattaccggac

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5XI57	Protein polyglycylase TTLL10 OS=Rattus norvegicus OX=10116 GN=Ttll10 PE=2 SV=2
A4Q9F3	Protein polyglycylase TTLL10 OS=Mus musculus OX=10090 GN=Ttll10 PE=1 SV=1
Q4R7H0	Protein polyglycylase TTLL10 OS=Macaca fascicularis OX=9541 GN=TTLL10 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004731 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03133 all species →	TTL	Tubulin-tyrosine ligase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR000064 all species →	Domain	Endopeptidase, NLPC/P60 domain	Interproscan
IPR004344 all species →	Family	Tubulin-tyrosine ligase/Tubulin polyglutamylase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47664 all species →	NLPC_P60 DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0036211 all species →	Biological Process	protein modification process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23628	TTLL10; tubulin--tyrosine ligase like protein 10	EC:6.3.2.-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.