Detailed information of FUN_020850-T1 in Siderastrea siderea

Genomic Location: contig_18:11775396...11818112
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004330 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01433
all species →
Peptidase_M1Peptidase family M1 domainDomainInterproscan
PF09127
all species →
Leuk-A4-hydro_CLeukotriene A4 hydrolase, C-terminalRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027268
all species →
Homologous_superfamilyPeptidase M4/M1, CTD superfamilyInterproscan
IPR033577
all species →
FamilyAminopeptidase OInterproscan
IPR001930
all species →
FamilyPeptidase M1, alanine aminopeptidase/leukotriene A4 hydrolaseInterproscan
IPR014782
all species →
DomainPeptidase M1, membrane alanine aminopeptidaseInterproscan
IPR042097
all species →
Homologous_superfamilyAminopeptidase N-like , N-terminal domain superfamliyInterproscan
IPR038502
all species →
Homologous_superfamilyPeptidase M1, LTA-4 hydrolase/aminopeptidase, C-terminal domain superfamilyInterproscan
IPR016024
all species →
Homologous_superfamilyArmadillo-type foldInterproscan
IPR015211
all species →
DomainPeptidase M1, leukotriene A4 hydrolase/aminopeptidase C-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46627
all species →
AMINOPEPTIDASE OInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005730
all species →
Cellular ComponentnucleolusInterproscan
GO:0070006
all species →
Molecular Functionmetalloaminopeptidase activityInterproscan
GO:0006508
all species →
Biological ProcessproteolysisInterproscan
GO:0008237
all species →
Molecular Functionmetallopeptidase activityInterproscan
GO:0008270
all species →
Molecular Functionzinc ion bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K09606C9ORF3; aminopeptidase OEC:3.4.11.-
Peptidases and inhibitorsko01002deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_020850-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
7TPM > 0
7Conditions
7.3Max TPM
0.4Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 1 0.09 1.71
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 4 5.66 7.26
unannotated 1 1 2.23 2.23
live coral tissue/skeleton 1 1 4.61 4.61

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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