Gene detail

Detailed information of FUN_021370-T1 in Dendrogyra cylindrus

Genomic Location: contig_40:3456922...3469343
NR annotation: XP_020613769.1, general transcription factor 3C polypeptide 4-like isoform X1 [Orbicella faveolata]
Species Dendrogyra cylindrus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_021370-T1

ATGGCGGACCACTGCAAAGCTCGCGAGGAAAAGACATTGGAGACCGTAAAACTAAGCTGTCTACCATCGTATCCTGGAGCTATATCGTGGTCTTTAGACGACCGAATATCTGTTATTACTGACCAATGTGTTTATATACTGACACCTGTGTTATCTCCTACAAAGTTTGGTGTCAATGTGGAAAGGACAACCATTGGTTGCAAAAAGCCTCTAGTACTGGATGTTGGTGTTGATAAGAAACAAATCACCAATGTTGAATCCTTACATTGGCGTATGGATCCCAATGTAAACTCTGCTATAATTCGTTGCACTGGCTTTCAAAAAGTTGCATGGTCACCCTTAAACTGCGACAGCAATGGCAGGTGTGTTATAGCAGCACTCTTTACAGAGTATCAACTTTGTATATACTTAGCTCCAACATTTGGTAGAAAGTGGAAAGAAGTTATTGATGTATCACAAGTGCTTAACAGTTATCTTACTCAAAACAATTTTGAGTTATGCCAGGATGTGATGCAGGAAACAACTCAAAAGAACTATGTTAAGCATGGTACAAACAAAGGAATATCACTCAGTAGGGAATATTCTCTCTTCAAGAAGCGTACACAACTCCTAGCATTTACTTGTTTGCATTGGTTTCCACAAATTTACCACAGTGGAGGAAACATTTCTTCAGTTGAGGAGGATAAAACAAGTGAAAACAAGAAGTTTGCAGTGTTGGCAACAGGAAACCAAAGTGGTACTTTGATGTTTTGGAGAGTGACCATACCTGTTACCTTGAATTCAGCAGAAGCAGTTCAACTTGTCGGATCCCTGAACACCCAGCAATCGTGGCCTTGTTCCCTATCATGGCAGGAGATGAGAGACAACCAAGGGCTGTTAGCTGTAGGTGGTTCAGATGGACTTGTTAAGGTTTTCTCTCTCAAAGTGTTGCCATCAATCAGTGGAGTTGCACAGTGTACACTGTGGGGAGACAAGGATGACATTCAAGTGCAGTGGTTGGACTGGCTGCACTCATCCCAGgcCCTTAATGGACTTCATCATCTAGTTGTGTGCAAAGGGCCATCAGTTGTTATATTTTCATTGTCTGTGAAGGATGACATCTTGATTCAAAAGCCACAGTACAAAATAATACAAGGTGTCCACAGGATGCCTATTACAGACCTGGCTTGTACACACAATGGGACTGTCTTTACTTCCAGCTTAGATGGTTCAGTGCAAACATCAACAGTTGatGGAAGGCCAGCAACTGCTGTTAATTATGATGCAAAAAAAGGCTTCGTGTGCAGTGGCATTGGAGTGTCCGCTAATGGTCTTTTCATTGCACTTTTCCTCTCTCCCGTAAACTACACACAGCAATCTCTGGAGTCTCATCAGATTCATATTCGGTTTGTTAACATTGCATGGGGGTCATCATCAGTTGCTCGTCTGCTGAACTGTAAAGATGTTCAACTGGAAAGAAGATGGGATGTGTGTAAAGCTCTGCAACACTCTATTTATTACAGCAAACACCTTCCAGCAGTAGAGCAGCTTCAACTGACTCCGCACTCAGACACGGATGCTTTGGAGACATGTTCGTTTGCTGAGTTAATAATCAGACATCACGTGTTTTCTGCTATGCTGCTTATCGCACGGCAGCAGGAATACGAGCTTGGAGGCAGCGAGTCAGTGCTAAACAACTTGTCAGCTCAGCTTGAATGCACGTTAAACTGCATATATAAACGTTTGGTTACTGCGAAATTATTGAGCTGGTTAGAAGGTAAAGAAGCAGGAACTGTAAATTATTCAGACTCAGTGTCAGCACTTATAATGTCCGACTGGTTAATAATGAATGGAAGTGACTCTGCTGCTTTCGATCTTGTTAGTAAAGTGTATCAAGCCTGTTTGGATACGGAAGGTTTAAACAAGATTATGTCACTTTGTAAAGGAAGCCAGCCAAGTGTTAAGCCAACTTCCATGAAAAGTGTTTTGCCCCAAGCCTCAACTGACAGCAATTCTGTCAATTTACAGAGTAATAATGAGACTTTGATAGAACGTGTGGACGAAAATCAGACGTCTGCTGCTGCAGTTGACATTTCTGTTTTGGAGGGTGAAAGTACAAGATTGGTAACTTTGCCAGCTAGAGAGACATGTCCAATATGTAAGGCTGCTATCCCTGTGGAAAGCTTGAATTATGGAACGTGCCTTAACGGGCACAAATGGCCGCGTTGCTTTGTTTCATTTGCTGTTTGTGCTGCACTAACATACAGACGTTGCCAGGACTGTAACAGATGTGTTTCAACTCCAAGTCTCGGATCATCTCTCTGGTTGCGTGATCTATTGCAGTTGACATCTAAATGccctttttgttttggcttctttCATTGA

Transcript

FUN_021370-T1

TGCGCGTTTGCCAAGCGAAGTGTGCGTCAAGATGGCGGACCACTGCAAAGCTCGCGAGGAAAAGACATTGGAGACCGTAAAACTAAGCTGTCTACCATCGTATCCTGGAGCTATATCGTGGTCTTTAGACGACCGAATATCTGTTATTACTGACCAATGTGTTTATATACTGACACCTGTGTTATCTCCTACAAAGTTTGGTGTCAATGTGGAAAGGACAACCATTGGTTGCAAAAAGCCTCTAGTACTGGATGTTGGTGTTGATAAGAAACAAATCACCAATGTTGAATCCTTACATTGGCGTATGGATCCCAATGTAAACTCTGCTATAATTCGTTGCACTGGCTTTCAAAAAGTTGCATGGTCACCCTTAAACTGCGACAGCAATGGCAGGTGTGTTATAGCAGCACTCTTTACAGAGTATCAACTTTGTATATACTTAGCTCCAACATTTGGTAGAAAGTGGAAAGAAGTTATTGATGTATCACAAGTGCTTAACAGTTATCTTACTCAAAACAATTTTGAGTTATGCCAGGATGTGATGCAGGAAACAACTCAAAAGAACTATGTTAAGCATGGTACAAACAAAGGAATATCACTCAGTAGGGAATATTCTCTCTTCAAGAAGCGTACACAACTCCTAGCATTTACTTGTTTGCATTGGTTTCCACAAATTTACCACAGTGGAGGAAACATTTCTTCAGTTGAGGAGGATAAAACAAGTGAAAACAAGAAGTTTGCAGTGTTGGCAACAGGAAACCAAAGTGGTACTTTGATGTTTTGGAGAGTGACCATACCTGTTACCTTGAATTCAGCAGAAGCAGTTCAACTTGTCGGATCCCTGAACACCCAGCAATCGTGGCCTTGTTCCCTATCATGGCAGGAGATGAGAGACAACCAAGGGCTGTTAGCTGTAGGTGGTTCAGATGGACTTGTTAAGGTTTTCTCTCTCAAAGTGTTGCCATCAATCAGTGGAGTTGCACAGTGTACACTGTGGGGAGACAAGGATGACATTCAAGTGCAGTGGTTGGACTGGCTGCACTCATCCCAGgcCCTTAATGGACTTCATCATCTAGTTGTGTGCAAAGGGCCATCAGTTGTTATATTTTCATTGTCTGTGAAGGATGACATCTTGATTCAAAAGCCACAGTACAAAATAATACAAGGTGTCCACAGGATGCCTATTACAGACCTGGCTTGTACACACAATGGGACTGTCTTTACTTCCAGCTTAGATGGTTCAGTGCAAACATCAACAGTTGatGGAAGGCCAGCAACTGCTGTTAATTATGATGCAAAAAAAGGCTTCGTGTGCAGTGGCATTGGAGTGTCCGCTAATGGTCTTTTCATTGCACTTTTCCTCTCTCCCGTAAACTACACACAGCAATCTCTGGAGTCTCATCAGATTCATATTCGGTTTGTTAACATTGCATGGGGGTCATCATCAGTTGCTCGTCTGCTGAACTGTAAAGATGTTCAACTGGAAAGAAGATGGGATGTGTGTAAAGCTCTGCAACACTCTATTTATTACAGCAAACACCTTCCAGCAGTAGAGCAGCTTCAACTGACTCCGCACTCAGACACGGATGCTTTGGAGACATGTTCGTTTGCTGAGTTAATAATCAGACATCACGTGTTTTCTGCTATGCTGCTTATCGCACGGCAGCAGGAATACGAGCTTGGAGGCAGCGAGTCAGTGCTAAACAACTTGTCAGCTCAGCTTGAATGCACGTTAAACTGCATATATAAACGTTTGGTTACTGCGAAATTATTGAGCTGGTTAGAAGGTAAAGAAGCAGGAACTGTAAATTATTCAGACTCAGTGTCAGCACTTATAATGTCCGACTGGTTAATAATGAATGGAAGTGACTCTGCTGCTTTCGATCTTGTTAGTAAAGTGTATCAAGCCTGTTTGGATACGGAAGGTTTAAACAAGATTATGTCACTTTGTAAAGGAAGCCAGCCAAGTGTTAAGCCAACTTCCATGAAAAGTGTTTTGCCCCAAGCCTCAACTGACAGCAATTCTGTCAATTTACAGAGTAATAATGAGACTTTGATAGAACGTGTGGACGAAAATCAGACGTCTGCTGCTGCAGTTGACATTTCTGTTTTGGAGGGTGAAAGTACAAGATTGGTAACTTTGCCAGCTAGAGAGACATGTCCAATATGTAAGGCTGCTATCCCTGTGGAAAGCTTGAATTATGGAACGTGCCTTAACGGGCACAAATGGCCGCGTTGCTTTGTTTCATTTGCTGTTTGTGCTGCACTAACATACAGACGTTGCCAGGACTGTAACAGATGTGTTTCAACTCCAAGTCTCGGATCATCTCTCTGGTTGCGTGATCTATTGCAGTTGACATCTAAATGccctttttgttttggcttctttCATTGATTTTCTTATCGTAACTGGGTTAAATTCATGCGCAATACAGACTATCGATTGAGTCAGTAATAAATGACTGCCATTTGTTTGTTTACTGGTTTTTAGACGCGTTTGTTGAACACACCCACTGCCCTATCCCATCATGTACTATTGTAGTTGAACGTTTGATATTGGCGTGCTGAGGTTAGTCAGTCCTTATCGGGACATCACAACAGCAGTACCAACGAAAAATACAGTTTACCTAACTGTTACTTGTTCATGCGGTCACTGATTCACTCATTGTTTCCCAGCCAGCGGGGTCAACTATAACTTTAATCGTACGGGG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BMQ2	General transcription factor 3C polypeptide 4 OS=Mus musculus OX=10090 GN=Gtf3c4 PE=1 SV=2
Q9UKN8	General transcription factor 3C polypeptide 4 OS=Homo sapiens OX=9606 GN=GTF3C4 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005336 (this species only)
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12660 all species →	zf-TFIIIC	Putative zinc-finger of transcription factor IIIC complex	Domain	Interproscan
PF12657 all species →	TFIIIC_delta	Transcription factor IIIC subunit delta bet-propeller domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR044230 all species →	Family	General transcription factor 3C polypeptide 4	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR024764 all species →	Domain	Transcription factor IIIC, putative zinc-finger	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR024761 all species →	Domain	Transcription factor IIIC, 90kDa subunit, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15496 all species →	GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 4 FAMILY	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000127 all species →	Cellular Component	transcription factor TFIIIC complex	Interproscan
GO:0004402 all species →	Molecular Function	histone acetyltransferase activity	Interproscan
GO:0006384 all species →	Biological Process	transcription initiation at RNA polymerase III promoter	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11310	GTF3C4, KAT12; general transcription factor 3C polypeptide 4	EC:2.3.1.48	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.