Detailed information of FUN_021405-T1 in Siderastrea siderea

Genomic Location: contig_19:5946070...5983915
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00028
all species →		CadherinCadherin domainDomainInterproscan
PF02210
all species →		Laminin_G_2Laminin G domainDomainInterproscan
PF01049
all species →		CADH_Y-type_LIRCadherin, Y-type LIR-motifFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002126
all species →		DomainCadherin-likeInterproscan
IPR000742
all species →		DomainEGF-like domainInterproscan
IPR015919
all species →		Homologous_superfamilyCadherin-like superfamilyInterproscan
IPR020894
all species →		Conserved_siteCadherin conserved siteInterproscan
IPR001791
all species →		DomainLaminin G domainInterproscan
IPR013320
all species →		Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR039808
all species →		FamilyCadherinInterproscan
IPR000233
all species →		DomainCadherin, Y-type LIR-motifInterproscan
IPR027397
all species →		Homologous_superfamilyCatenin binding domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24027
all species →		CADHERIN-23Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005509
all species →		Molecular Functioncalcium ion bindingInterproscan
GO:0007156
all species →		Biological Processhomophilic cell adhesion via plasma membrane adhesion moleculesInterproscan
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0005886
all species →		Cellular Componentplasma membraneInterproscan
GO:0007155
all species →		Biological Processcell adhesionInterproscan
GO:0000902
all species →		Biological Processcell morphogenesisInterproscan
GO:0005912
all species →		Cellular Componentadherens junctionInterproscan
GO:0007043
all species →		Biological Processcell-cell junction assemblyInterproscan
GO:0007275
all species →		Biological Processmulticellular organism developmentInterproscan
GO:0016339
all species →		Biological Processcalcium-dependent cell-cell adhesion via plasma membrane cell adhesion moleculesInterproscan
GO:0016342
all species →		Cellular Componentcatenin complexInterproscan
GO:0034332
all species →		Biological Processadherens junction organizationInterproscan
GO:0044331
all species →		Biological Processcell-cell adhesion mediated by cadherinInterproscan
GO:0045296
all species →		Molecular Functioncadherin bindingInterproscan
GO:0098609
all species →		Biological Processcell-cell adhesionInterproscan
GO:0098742
all species →		Biological Processcell-cell adhesion via plasma-membrane adhesion moleculesInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_021405-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_021405-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
7TPM > 0
7Conditions
87.2Max TPM
4.8Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 1 0.33 6.53
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 4 78.89 87.16
unannotated 1 1 36.03 36.03
live coral tissue/skeleton 1 1 52.52 52.52

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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