Detailed information of FUN_021610-T1 in Dendrogyra cylindrus

Genomic Location: contig_41:2933592...2943283
NR annotation: XP_020630406.1, 60S ribosome subunit biogenesis protein NIP7 homolog [Orbicella faveolata]
Species Dendrogyra cylindrus · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A4QND560S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus tropicalis OX=8364 GN=nip7 PE=2 SV=1
Q6DFH960S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus laevis OX=8355 GN=nip7 PE=2 SV=1
Q4T2X860S ribosome subunit biogenesis protein NIP7 homolog OS=Tetraodon nigroviridis OX=99883 GN=nip7 PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0007164 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF03657
all species →		UPF0113UPF0113 PUA domainDomainInterproscan
PF17833
all species →		UPF0113_NUPF0113 Pre-PUA domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR040598
all species →		Domain60S ribosome subunit biogenesis protein NIP7, pre-PUA domainInterproscan
IPR002478
all species →		DomainPUA domainInterproscan
IPR005155
all species →		DomainUPF0113, PUA domainInterproscan
IPR015947
all species →		Homologous_superfamilyPUA-like superfamilyInterproscan
IPR036974
all species →		Homologous_superfamilyPUA domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23415
all species →		CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003723
all species →		Molecular FunctionRNA bindingInterproscan
GO:0005730
all species →		Cellular ComponentnucleolusInterproscan
GO:0030687
all species →		Cellular Componentpreribosome, large subunit precursorInterproscan
GO:0042273
all species →		Biological Processribosomal large subunit biogenesisInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_021610-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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