Gene detail

Detailed information of FUN_021633-T1 in Siderastrea siderea

Genomic Location: contig_19:8951332...8992139
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_021633-T1

ATGGCGGATGATTCCGCAGAAATGGAGTCAGGGCTCTTAGAAAATGTGCAGTTCGCTATCAGACGAAACATTGAACTAGCCTTTGTCAAGAAAGCGAAAATAGAATTCAAGGGTGACCGTTCAGAAGCCAGAATTTTGGCCCTCTCTGCACACAGATTTTATGTTCTGACTTGCTCCAAGAATGGATGTAAGGTGGATTTTAGTATGCATATCTTGGAAATACAGAAAATTGAGAGTAGTAAACCTCTTTTGTTAACTCTCTCATGTGGTGACAAGTCGCATGAGAAGTCATATTATTTCCGTGTTGCTCAGCCAAGAGACACCATAGAGATAATTGCCCACATTTTGGCCTCCCTTAAATTCAACTTTCCATCTGGCAGTCCAGACCGACTTCTGAGGGTAGTTTATGGGCCCCCAGAAGAAAGTGAAGAGCGGCAAGCACAGGTGACAACACTTGTCAATAACCTGCGGAATACAGAAGGAGATGTAGAGACGGGGCCTTGTGGTGGATATTCACAAGTTTATGTTTCCATCTCTGATTTTTATGGACAGCCACATTTAGAGGAAGTTGTTTGGGATATTGACACAATTTATTTATCACTCAATTCAAAAGAGTTGAACATCCAGGACTTTGACCATCTAGAGCAAAAGGATTTGGTTCCTATCATTTCAACACTGGAGTACAATGACTGGTTCACCAAATTGACCTGTGATTCATTTAAACTGGGATCTGAAGTCTGTGATGCAATTCTAAGAGTCATTAAAAAGTCGCCCACAATAGAAGAATTAGTACTTGATAACGTCAGTCTTGGCAGGGACTACTGTCAGAAACTTGCATTGGCTCTCACATcaaaccctaaaacatccctgCATTCTCTGAGTTTGAGTAGTAACTCTGTTGAGGACAGAGGTTTGGTGCATTTGTCTGGTGTCTTCAGTAAGCTTTCCCATGGCCTGGTTTCTCTTTCTCTAGCTGATAATGGCATCATGTCAAAAGGAGCTATTTCACTTGGTCAGGCATTAAGATCAAATAAGTACAATGAAAGCTCTCTACAGAGattgGATCTCAGTAGAAATCTTTTCAAAGGAGATGGAGTTGCTGGTCTATGTGATTTCTTAGCACAGCCAAACACTTTGACCCACCTGAATCTGTCAGAAACCGAATGTCCTCTTGACTTGTTATTTGGTGCTCTCATTCGAGGCTGTGTTCAACAGTTAGCTTATATCCATCTTGCTGGCAACAACTTCACCTCAAAGAAAAGTAAAGATGCAGTTGTTCCACCATCATTCCAACAGtttttCAGTAGCTCTCAAGCTCTTAAATTGTTAGATGTATCAGACTGTAAACTACACGCCGATGCCATAAGagCAATTCTAAAAGGATTAAGTGAGAACACTGTTCTTAGTGATGTTGAACTCAACATCAGCAGTAATGAGCTTAGGGGTCCTGGAGCCAAAGCCATTGCTGAGAATATATCCAAACTTAAAAGTGTGGGCAGACTTGATATTAGTGATAATGGTTTTGAAGGAGATTTAgtcaaaatacttgaaaaaatgtcttcaaacaaatcaataaagTATCTGAACCTGGGAGAGAATACCAAGCACTCTAGGAGTTCAGCTACTGTTGTGGAAGCTTTAGTTCAGCTAATATGTGAGGAAAACTCGCAACTCGAGTCCATCTCTTTAGCTGAGTCCAAACTCAAAGATGATATCATTCCACTTCTGGATGCTCTTGGTACAAATGAAAGCGTGAAAGAACTTGACATCAGTGGGAATCAAATGGGTGATGAAGGAGCACGCTTTCTGGCCAAGGCTCTTCAAATCAACAGCAAGCTTAGAACACTAGATTGGGACAAGAACGGGACAACGTACCGAGGATTTGCAGACATCGCGGCTGCTCTGAAGTGTAACTACACCTTGCTTTCCATGCCGATGCCTTTGTACGATGCTGCTCAGTCACTTAAACCTCAAACAGAGCAACACCTAAGAACGATTGAGAAGTTATTGCTCAGAAATCAGTCTCCTCACAAAGTTGTAACAGATCAGGCATACAGATTACAACAGGGTCTCCTACTCGGATCCACCCAACAACAGATGGTGGATCGGCTGGTGGTTCAGTTGCAGGACCTTATAAGTGATCTCCGACTTTCCAAGGACACTGATGTTAAAAACGAGATCAAAACGGCAAAACATTTTATACAGGATGCAGACAAGCTTAAACAGTTGCTGCTGAAGTTCCATCTGTGTACAAATGACAATGATATTGAGGCAAGATTTGCTGAGCTCTCTGCTGAGTTTTACAAAGCAGCTGAAGAAAAAATGAAGAGCAACAGGGACAAGATGATTGATTGTGCGAAAGAAGTTTGTCCTTACATCACATCTGCAGACGATGTGAAGAGTCGTCTCGAAGCGGTTGTTGAGGGCAAGCCACAGCTAAGTGAAACGTTTGTGGAGGAAGTCATTCTGACTCAAGCCGCCTCAGGAATCGCCAACAGGTTAAGTGAAGATAAGCTTACAGTAGCGTCTGTGATGGTAGACACGATCATGGAGATGATGATTCATCAACTGGAGGCCAGTGTAACTAAACTGGATCTGCTTCTTCAAGACCATCGAAACAAGATGGAAGAAGCAGAGAAAGGAGCTGAAAAGAGCGCGGACGAGGACGATGTGGCAGCGGTGGCGCGTAAGGCTCGTAACCGCCTCAGCTCTTCCCAGCTAGTGGTGCCCACGATACCAGACGGAACGGACTCGGGGGGCAGGAGCCATAAGAGACGGCCCACAGTCAGCAGGCGTCCAACTCACGCCAGAGTAGCGGAGGAAgacgaagaaaaagaaaaagaggacAAGGAAGTAGTCAAGGTCGTCAAGGAAGAGGTGGAAACAAAGCCGCCGCCTAAGCTTGTCGTCAAAACAGactTCGTTGATGTGGAACCCCAGGCATCAGCGCTGAAGCACTTGGCTAAGGACCGTGCTCGTCCCCCTCAGAAAAGGCGCCTACCCACCCGTCCCTCTAACAGACCAGCTGTTGCTAATGGTTCTGGCCAAGAGAACGGAGAGGAACAGGAAGATATTGAAGTATTTTGGAACAAAACAGTGGAAGCaCCGGCTGTGGAGGTTACCCCACCTACTAAGAAGACATCAACGTCCAAAACTCCTCCTGCCACGACTCAGGCTCCCCCACCAAGCAAAACCTCACCACCCAAACCTGCACCCAAACCAAAACCGTCACCTAAAGCAAAGGAACCTGAGgagACCAAAAAATCTGGTTGGATACCCAAGGGGGTTCCGATTCCTGGATTCCTGAAAAAGAAATACAGGGATCGCTCTTCGACGGCTCCGGACACAACAGAGGTGGCATCCACGGCTTGGTACACGAGTGACGttgaaaagaagaaaaaaggcgATTCCGCTAAAGAAAGTAGAAACAGAGCTGCTTCTGAGAAGAAACCAGTCGTGACAGTAGAAAGGACCTCGTCTGACATGAAAGCGAACGTAACCAAAGAAAGAGTTCCCTCAGAAAAGAAACCTGAAGTGTCCAAAGAAGCGACACCACCTGAGAAGAAAAAGGAAGAGTCGAAAGAAAAGGTTCCCTCTGAGAAAAAACCGGAAGTAACACCAACTGAGAAAAAACCGGAAGTAACCCCAACTGAGAAAAAAGCGGAAGTAAAAGTAGAAAGGAGGACCTCAGATAAGAAACCGGAAGTTGAGAGGCCGATTATAATGGGCGTGAAACCATTTGCTCTTTCACGTGATAGGGCCACTACAGAGACTGGACTCCGTCCTTCACCCCCTCAACCACGTGACAGGGCGGCTACGAGTGACAAAGTTGCTGCGAAGACCACCCCTGATGAACCAGCAGCTGCACCTGCACCCGCGCCTGCTAAAAGACCGCCCAAATTTGGAGTTGGGATAGGCGGGGTAGCAGGGGGAGGACTATTGGCTGAAATGAAACTAAGGCAGGAAAGAGCAGCGAGCCTGGGAAGGAACAAAGCTCCTGAAAAGCCAGCTGAGACTAAACCAGCTGATAAACCTGGCACCGGAAGTAAAGAGAAAGAAGCGGAAGTGGCTAAGGAAAGACTTGTTAAACCGTCTTCAATTAAGAGACCCAGATTACCATCTGGTACACCGCCCAAACCCGCTCCACGACCGAAGAGAGAAtcaagagaagagaaaaaagttGAAAGACCGGAGGAACAGAAAGAAGAAAAACCGGAAGAGAAAAAGGTGGAAAAGCCGGAAGAGAACAAGCTCGAAAAGACAGaagagaaaaaaggagaaaaacaagaacaaaagaaagaggAAGAACCAGAAGAGAAAAAGGTggaaaaaccggaagaaaagGAACTGGaagagaaaagggaaaaaaaaccagcGGAAACCAAAGAGGAAAAGCCGGAAGAGAAAAACGTGGAGGAAGCAGAGAAGAAGCCTGAAGTTGAAGGAAAAAAGAACGAAGCCGTCGAGGAAGACAAAACAGAGAAAGAGAAAGCGGAGGAAACGCAACCAAAAATAGGAGTAAATGATAAGGAAAGACAACCCAGTGAAAAGGAAACGGAAGTAAGTGTGGATAAAGTAGTAGACAAGGTGGAAAAGTCAGAagtgaagaaagaagaaaaaccgTTAGAAGACAAGGAAAACGTAGATGGAAAGCcagagaaagaagaaagaaggaaaagCGGGACAAAACAGGAAGGTTCAATGGACGACTTGTGGCTCAAACAGGAGCCAGGTAAACAAGCTCTTAGACCAGGAGGTCGATCCAACTCGCTTAAAGTACAACGAGCCACCTCAACCGAGAAGGTCACCACTGCTCGGTCAGCCACCCTTCCGAAACCCTGGTCCCCAGGACAGGCTCCATCCAGCATGCTATCTAGAAAACTCAGCTGGGAGCTGCCTAAGGTCGGTGATGATGCTGCTGTCAGGGGAGCGAAGAAGGATCGAACTGATAGTAGAGGGGAGGAGACTATTCAAGAGGACGCTGAGGAGCCAAATAGTAAAACGTCGACTGTTGCTTccaaggaagaagaaaaagcagagaaaaaggaaaaaagtgaaGACGAAACTAAAGATAAGAAAGAAAATGGCGCAGTACTGAAGAGTCCTGGCGTGGTTACCTTAGAGGACATTTTAGCCTCTGATGGCGACACAACATTGTAA

Transcript

FUN_021633-T1

AGGCACATGAAAGGCATGATAGCGTGTGTGACAGAAGGATGGGATTTTTGTGGTGGCTTTTGCTGAACTAAGAAGCCTTCCTTATCCGAAATAAACAGCGCATCTTGTCGGCGAAGCCATGGCGGATGATTCCGCAGAAATGGAGTCAGGGCTCTTAGAAAATGTGCAGTTCGCTATCAGACGAAACATTGAACTAGCCTTTGTCAAGAAAGCGAAAATAGAATTCAAGGGTGACCGTTCAGAAGCCAGAATTTTGGCCCTCTCTGCACACAGATTTTATGTTCTGACTTGCTCCAAGAATGGATGTAAGGTGGATTTTAGTATGCATATCTTGGAAATACAGAAAATTGAGAGTAGTAAACCTCTTTTGTTAACTCTCTCATGTGGTGACAAGTCGCATGAGAAGTCATATTATTTCCGTGTTGCTCAGCCAAGAGACACCATAGAGATAATTGCCCACATTTTGGCCTCCCTTAAATTCAACTTTCCATCTGGCAGTCCAGACCGACTTCTGAGGGTAGTTTATGGGCCCCCAGAAGAAAGTGAAGAGCGGCAAGCACAGGTGACAACACTTGTCAATAACCTGCGGAATACAGAAGGAGATGTAGAGACGGGGCCTTGTGGTGGATATTCACAAGTTTATGTTTCCATCTCTGATTTTTATGGACAGCCACATTTAGAGGAAGTTGTTTGGGATATTGACACAATTTATTTATCACTCAATTCAAAAGAGTTGAACATCCAGGACTTTGACCATCTAGAGCAAAAGGATTTGGTTCCTATCATTTCAACACTGGAGTACAATGACTGGTTCACCAAATTGACCTGTGATTCATTTAAACTGGGATCTGAAGTCTGTGATGCAATTCTAAGAGTCATTAAAAAGTCGCCCACAATAGAAGAATTAGTACTTGATAACGTCAGTCTTGGCAGGGACTACTGTCAGAAACTTGCATTGGCTCTCACATcaaaccctaaaacatccctgCATTCTCTGAGTTTGAGTAGTAACTCTGTTGAGGACAGAGGTTTGGTGCATTTGTCTGGTGTCTTCAGTAAGCTTTCCCATGGCCTGGTTTCTCTTTCTCTAGCTGATAATGGCATCATGTCAAAAGGAGCTATTTCACTTGGTCAGGCATTAAGATCAAATAAGTACAATGAAAGCTCTCTACAGAGattgGATCTCAGTAGAAATCTTTTCAAAGGAGATGGAGTTGCTGGTCTATGTGATTTCTTAGCACAGCCAAACACTTTGACCCACCTGAATCTGTCAGAAACCGAATGTCCTCTTGACTTGTTATTTGGTGCTCTCATTCGAGGCTGTGTTCAACAGTTAGCTTATATCCATCTTGCTGGCAACAACTTCACCTCAAAGAAAAGTAAAGATGCAGTTGTTCCACCATCATTCCAACAGtttttCAGTAGCTCTCAAGCTCTTAAATTGTTAGATGTATCAGACTGTAAACTACACGCCGATGCCATAAGagCAATTCTAAAAGGATTAAGTGAGAACACTGTTCTTAGTGATGTTGAACTCAACATCAGCAGTAATGAGCTTAGGGGTCCTGGAGCCAAAGCCATTGCTGAGAATATATCCAAACTTAAAAGTGTGGGCAGACTTGATATTAGTGATAATGGTTTTGAAGGAGATTTAgtcaaaatacttgaaaaaatgtcttcaaacaaatcaataaagTATCTGAACCTGGGAGAGAATACCAAGCACTCTAGGAGTTCAGCTACTGTTGTGGAAGCTTTAGTTCAGCTAATATGTGAGGAAAACTCGCAACTCGAGTCCATCTCTTTAGCTGAGTCCAAACTCAAAGATGATATCATTCCACTTCTGGATGCTCTTGGTACAAATGAAAGCGTGAAAGAACTTGACATCAGTGGGAATCAAATGGGTGATGAAGGAGCACGCTTTCTGGCCAAGGCTCTTCAAATCAACAGCAAGCTTAGAACACTAGATTGGGACAAGAACGGGACAACGTACCGAGGATTTGCAGACATCGCGGCTGCTCTGAAGTGTAACTACACCTTGCTTTCCATGCCGATGCCTTTGTACGATGCTGCTCAGTCACTTAAACCTCAAACAGAGCAACACCTAAGAACGATTGAGAAGTTATTGCTCAGAAATCAGTCTCCTCACAAAGTTGTAACAGATCAGGCATACAGATTACAACAGGGTCTCCTACTCGGATCCACCCAACAACAGATGGTGGATCGGCTGGTGGTTCAGTTGCAGGACCTTATAAGTGATCTCCGACTTTCCAAGGACACTGATGTTAAAAACGAGATCAAAACGGCAAAACATTTTATACAGGATGCAGACAAGCTTAAACAGTTGCTGCTGAAGTTCCATCTGTGTACAAATGACAATGATATTGAGGCAAGATTTGCTGAGCTCTCTGCTGAGTTTTACAAAGCAGCTGAAGAAAAAATGAAGAGCAACAGGGACAAGATGATTGATTGTGCGAAAGAAGTTTGTCCTTACATCACATCTGCAGACGATGTGAAGAGTCGTCTCGAAGCGGTTGTTGAGGGCAAGCCACAGCTAAGTGAAACGTTTGTGGAGGAAGTCATTCTGACTCAAGCCGCCTCAGGAATCGCCAACAGGTTAAGTGAAGATAAGCTTACAGTAGCGTCTGTGATGGTAGACACGATCATGGAGATGATGATTCATCAACTGGAGGCCAGTGTAACTAAACTGGATCTGCTTCTTCAAGACCATCGAAACAAGATGGAAGAAGCAGAGAAAGGAGCTGAAAAGAGCGCGGACGAGGACGATGTGGCAGCGGTGGCGCGTAAGGCTCGTAACCGCCTCAGCTCTTCCCAGCTAGTGGTGCCCACGATACCAGACGGAACGGACTCGGGGGGCAGGAGCCATAAGAGACGGCCCACAGTCAGCAGGCGTCCAACTCACGCCAGAGTAGCGGAGGAAgacgaagaaaaagaaaaagaggacAAGGAAGTAGTCAAGGTCGTCAAGGAAGAGGTGGAAACAAAGCCGCCGCCTAAGCTTGTCGTCAAAACAGactTCGTTGATGTGGAACCCCAGGCATCAGCGCTGAAGCACTTGGCTAAGGACCGTGCTCGTCCCCCTCAGAAAAGGCGCCTACCCACCCGTCCCTCTAACAGACCAGCTGTTGCTAATGGTTCTGGCCAAGAGAACGGAGAGGAACAGGAAGATATTGAAGTATTTTGGAACAAAACAGTGGAAGCaCCGGCTGTGGAGGTTACCCCACCTACTAAGAAGACATCAACGTCCAAAACTCCTCCTGCCACGACTCAGGCTCCCCCACCAAGCAAAACCTCACCACCCAAACCTGCACCCAAACCAAAACCGTCACCTAAAGCAAAGGAACCTGAGgagACCAAAAAATCTGGTTGGATACCCAAGGGGGTTCCGATTCCTGGATTCCTGAAAAAGAAATACAGGGATCGCTCTTCGACGGCTCCGGACACAACAGAGGTGGCATCCACGGCTTGGTACACGAGTGACGttgaaaagaagaaaaaaggcgATTCCGCTAAAGAAAGTAGAAACAGAGCTGCTTCTGAGAAGAAACCAGTCGTGACAGTAGAAAGGACCTCGTCTGACATGAAAGCGAACGTAACCAAAGAAAGAGTTCCCTCAGAAAAGAAACCTGAAGTGTCCAAAGAAGCGACACCACCTGAGAAGAAAAAGGAAGAGTCGAAAGAAAAGGTTCCCTCTGAGAAAAAACCGGAAGTAACACCAACTGAGAAAAAACCGGAAGTAACCCCAACTGAGAAAAAAGCGGAAGTAAAAGTAGAAAGGAGGACCTCAGATAAGAAACCGGAAGTTGAGAGGCCGATTATAATGGGCGTGAAACCATTTGCTCTTTCACGTGATAGGGCCACTACAGAGACTGGACTCCGTCCTTCACCCCCTCAACCACGTGACAGGGCGGCTACGAGTGACAAAGTTGCTGCGAAGACCACCCCTGATGAACCAGCAGCTGCACCTGCACCCGCGCCTGCTAAAAGACCGCCCAAATTTGGAGTTGGGATAGGCGGGGTAGCAGGGGGAGGACTATTGGCTGAAATGAAACTAAGGCAGGAAAGAGCAGCGAGCCTGGGAAGGAACAAAGCTCCTGAAAAGCCAGCTGAGACTAAACCAGCTGATAAACCTGGCACCGGAAGTAAAGAGAAAGAAGCGGAAGTGGCTAAGGAAAGACTTGTTAAACCGTCTTCAATTAAGAGACCCAGATTACCATCTGGTACACCGCCCAAACCCGCTCCACGACCGAAGAGAGAAtcaagagaagagaaaaaagttGAAAGACCGGAGGAACAGAAAGAAGAAAAACCGGAAGAGAAAAAGGTGGAAAAGCCGGAAGAGAACAAGCTCGAAAAGACAGaagagaaaaaaggagaaaaacaagaacaaaagaaagaggAAGAACCAGAAGAGAAAAAGGTggaaaaaccggaagaaaagGAACTGGaagagaaaagggaaaaaaaaccagcGGAAACCAAAGAGGAAAAGCCGGAAGAGAAAAACGTGGAGGAAGCAGAGAAGAAGCCTGAAGTTGAAGGAAAAAAGAACGAAGCCGTCGAGGAAGACAAAACAGAGAAAGAGAAAGCGGAGGAAACGCAACCAAAAATAGGAGTAAATGATAAGGAAAGACAACCCAGTGAAAAGGAAACGGAAGTAAGTGTGGATAAAGTAGTAGACAAGGTGGAAAAGTCAGAagtgaagaaagaagaaaaaccgTTAGAAGACAAGGAAAACGTAGATGGAAAGCcagagaaagaagaaagaaggaaaagCGGGACAAAACAGGAAGGTTCAATGGACGACTTGTGGCTCAAACAGGAGCCAGGTAAACAAGCTCTTAGACCAGGAGGTCGATCCAACTCGCTTAAAGTACAACGAGCCACCTCAACCGAGAAGGTCACCACTGCTCGGTCAGCCACCCTTCCGAAACCCTGGTCCCCAGGACAGGCTCCATCCAGCATGCTATCTAGAAAACTCAGCTGGGAGCTGCCTAAGGTCGGTGATGATGCTGCTGTCAGGGGAGCGAAGAAGGATCGAACTGATAGTAGAGGGGAGGAGACTATTCAAGAGGACGCTGAGGAGCCAAATAGTAAAACGTCGACTGTTGCTTccaaggaagaagaaaaagcagagaaaaaggaaaaaagtgaaGACGAAACTAAAGATAAGAAAGAAAATGGCGCAGTACTGAAGAGTCCTGGCGTGGTTACCTTAGAGGACATTTTAGCCTCTGATGGCGACACAACATTGTAAACACTTCGGTTACTGTTTTGGCAGCTGAGACTGCGGCTCAGCGGTTTGGGCAAGAGCAGCACCAAAATGAGGCGAATAGACTCATTTGTCTTGTTTTcgacctcccc

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13516 all species →	LRR_6	Leucine Rich repeat	Repeat	Interproscan
PF16000 all species →	CARMIL_C	CARMIL C-terminus	Family	Interproscan
PF17888 all species →	Carm_PH	Carmil pleckstrin homology domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051279 all species →	Family	Protein Phosphatase 1 Regulatory and Actin Interaction Protein	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR031943 all species →	Domain	CARMIL, C-terminal domain	Interproscan
IPR041245 all species →	Domain	CARMIL, pleckstrin homology domain	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24112 all species →	LEUCINE-RICH REPEAT, ISOFORM F-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0016477 all species →	Biological Process	cell migration	Interproscan
GO:0030027 all species →	Cellular Component	lamellipodium	Interproscan
GO:0034315 all species →	Biological Process	regulation of Arp2/3 complex-mediated actin nucleation	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20493	LRRC16, CARMIL; leucine-rich repeat-containing protein 16	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_021633-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples

66TPM > 0

7Conditions

303.8Max TPM

115.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
holobiont · low.pH_high.temp	20	18	124.49	262.51
holobiont · low.pH Control.temp	20	14	99.21	235.32
holobiont · control.pH_high.temp	20	14	111.62	278.46
holobiont · control.pH Control.temp	19	14	126.81	303.84
Whole organism	4	4	142.44	156.58
unannotated	1	1	94.32	94.32
live coral tissue/skeleton	1	1	41.28	41.28

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR22214421	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	262.51
SRR22214406	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	258.93
SRR22214403	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	241.28
SRR22214415	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	183.09
SRR22214414	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	177.09
SRR22214408	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	175.83
SRR22214413	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	154.72
SRR22214418	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	130.44
SRR22214412	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	126.63
SRR22214410	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	125.33
SRR22214420	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	120.66
SRR22214409	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	118.03
SRR22214404	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	101.20
SRR22214417	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	84.34
SRR22214407	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	79.37
SRR22214419	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	62.40
SRR22214402	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	54.45
SRR22214405	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	33.55
SRR22214416	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214423	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214439	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	235.32
SRR22214430	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	204.74
SRR22214431	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	196.38
SRR22214436	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	187.76
SRR22214437	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	173.61
SRR22214425	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	168.82
SRR22214434	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	137.97
SRR22214438	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	122.50
SRR22214428	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	111.08
SRR22214426	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	107.47
SRR22214442	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	104.54
SRR22214429	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	85.94
SRR22214427	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	82.86
SRR22214424	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	65.12
SRR22214432	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214435	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214440	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214441	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214443	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214445	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214453	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	278.46
SRR22214447	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	181.33
SRR22214459	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	180.46
SRR22214460	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	167.83
SRR22214448	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	161.20
SRR22214450	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	158.48
SRR22214454	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	154.31
SRR22214458	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	154.03
SRR22214461	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	150.67
SRR22214456	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	150.39
SRR22214465	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	146.97
SRR22214464	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	145.39
SRR22214446	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	102.73
SRR22214457	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	100.21
SRR22214449	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214451	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214452	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214462	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214463	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214467	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214471	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	303.84
SRR22214469	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	227.97
SRR22214547	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	216.28
SRR22214433	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	210.81
SRR22214481	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	178.04
SRR22214411	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	176.72
SRR22214400	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	162.15
SRR22214506	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	157.96
SRR22214524	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	146.94
SRR22214468	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	144.28
SRR22214422	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	141.57
SRR22214466	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	128.67
SRR22214470	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	118.68
SRR22214535	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	95.42
SRR22214444	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR22214455	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR22214492	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR22214546	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR22214548	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR14295601	Whole organism	Whole organism	not recorded	not recorded	SRP315757	156.58
SRR14295600	Whole organism	Whole organism	not recorded	not recorded	SRP315757	154.47
SRR14295603	Whole organism	Whole organism	not recorded	not recorded	SRP315757	130.94
SRR14295604	Whole organism	Whole organism	not recorded	not recorded	SRP315757	127.75
ERR12861049	unannotated	not recorded	not recorded	not recorded	ERP159209	94.32
SRR12454619	live coral tissue/skeleton	live coral tissue/skeleton	not recorded	not recorded	SRP277390	41.28

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.