Detailed information of FUN_021768-T1 in Siderastrea siderea

Genomic Location: contig_19:10678946...10710601
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13901
all species →		RH_domRubicon Homology DomainDomainInterproscan
PF02759
all species →		RUNRUN domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR037213
all species →		Homologous_superfamilyRUN domain superfamilyInterproscan
IPR004012
all species →		DomainRUN domainInterproscan
IPR025258
all species →		DomainRubicon Homology DomainInterproscan
IPR047983
all species →		DomainDifferentially expressed in FDCP 8, C conserved region 1Interproscan
IPR046349
all species →		Homologous_superfamilyC1-like domain superfamilyInterproscan
IPR002219
all species →		DomainProtein kinase C-like, phorbol ester/diacylglycerol-binding domainInterproscan
IPR051366
all species →		FamilyDifferentially Expressed in FDCP 8 HomologInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12326
all species →		PLECKSTRIN HOMOLOGY DOMAIN CONTAINING PROTEINInterproscan

 Gene Ontology
No Gene Ontology signature was detected for FUN_021768-T1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K19330RUBCN; run domain Beclin-1 interacting and cysteine-rich containing protein-Membrane traffickingko04131deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_021768-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
49TPM > 0
7Conditions
118.6Max TPM
29.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 10 23.39 86.54
holobiont · low.pH Control.temp 20 11 41.13 118.56
holobiont · control.pH_high.temp 20 10 24.20 74.59
holobiont · control.pH Control.temp 19 12 33.26 98.50
Whole organism 4 4 9.84 10.97
unannotated 1 1 8.40 8.40
live coral tissue/skeleton 1 1 10.09 10.09

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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