Detailed information of FUN_021966-T1 in Siderastrea siderea

Genomic Location: contig_20:1494797...1499694
NR annotation: no NCBI-NR hit recorded
Species abbreviation SSIDE · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Ubiquitin familyE3|E3 activity RING|RING · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13923
all species →		zf-C3HC4_2Zinc finger, C3HC4 type (RING finger)DomainInterproscan
PF13705
all species →		TRC8_NTRC8 N-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001841
all species →		DomainZinc finger, RING-typeInterproscan
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR025754
all species →		DomainTRC8-like, N-terminal domainInterproscan
IPR011016
all species →		DomainZinc finger, RING-CH-typeInterproscan
IPR050731
all species →		FamilyHRD1 family E3 ubiquitin-protein ligasesInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22763
all species →		RING ZINC FINGER PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0008270
all species →		Molecular Functionzinc ion bindingInterproscan
GO:0005783
all species →		Cellular Componentendoplasmic reticulumInterproscan
GO:0012505
all species →		Cellular Componentendomembrane systemInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K23789RNF145; E3 ubiquitin-protein ligase RNF145EC:2.3.2.27
Ubiquitin systemko04121deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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