Gene detail

Detailed information of FUN_022055-T1 in Siderastrea siderea

Genomic Location: contig_20:2477419...2493999
NR annotation: no NCBI-NR hit recorded
Species abbreviation SSIDE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_022055-T1

GGCGGTCTCTTCAGTTTTCTTGTAGGGCTTCCATTCTTGAGCCTGCGATCTTAACAATGAAAATAAGACAGTATGCGTGGAAGTCCAAACATCTCCTGCGCAGGAGTAGGATTTTGGTTTGGAGGATCACCGGCAAATATGGCTCTTTCTCGCAACTTTTTACGAGTCCCAAGCAAGGGTGTCCTTTCAAAGATTTGTCGGGCTGGTTTTAGCACAACACCTCGGGCTGCTGCGACTATGGCAGTTCGAGATGCTATAAATGCAGCTATGGAGGAGGAGATCAAGAGAGATGATCGAGTCTTCTTGTTAGGTGAAGAAGTTGCCATGTATGATGGTGCCTACAAGGTGAGTCGAGGATTGTGGCAGAAGTTTGGCGACAAGAGAGTTATAGACACGCCCATCAGTGAGATGGGTTTTGCTGGTATTGCAGTGGGAGCTGCTATGgcTGGACTTAGACCTATCTGTGAATTCATGACATTCAATTTTGCAATGCAGGCTATTGACCAGATAATAAATTCTGCAGCTAAAACATTCTACATGTCTGCTGGCCAGGTTCCTGTCCCCATTGTATTTAGAGGTCCAAATGGTGCCGCAGCAGGAGTGGCTGCTCAGCATTCACAGTGTTATGCTGCATGGTACGGTCACTGCCCAGGTCTGAAGGTGGTCTCTCCATATTCAGCTGAAGATGCAAAAGGTTTGCTCAAGTCAGCTGTCAGAGACTCTGATCCAGTGGTGGTTCTAGAAAATGAAGTTATGTATGGTGTACAGTTTGAAATGTCTGAGGAAGCCATGAGTCCAGATTTTTTATTACCCATTGGTAAAGCCAAGATTGAAAGAGCCGGAAATCACATCACCATAGTAGCACACTCAAGATCTGTTCAAATTGCTTTGGATGCTGCTAAGCAGTTAGAAGCAGAAGGCGTTGACTGTGAGGTAATCAACCTTCGTACCATTCGTCCAATGGACACAGAATGCATCGAAAACTCCGTCAAAAAAACAAATCATCTTATTACCATTGAGGGAGGCTGGCCTCACTTTGGTGTTGGGGCGGAGATTGCTGCTTCTGTTATGGAAGGCGATGCATTTGACTACCTTGACGCTCCAATATTCCGAGTCACGGGGGCAGATATCCCTATGCCTTACGCTCAACTGTTAGAATCAAACTCTGTACCTCAAGTGCAAAATGCTGTCCTTACTGTGAAAAAATGCCTCAATCTAGCTTAACGAGACTCCAACTATCAAGAATAGAATCAGATTAATTAGGTCTAAGATGTAAATTGATGCTAATGAAATACGTTTTTATGGTGACTGGGCAGAAACTGCTGCGTATATTATTAACAATGCACGTATCTATAATCTCTGAAGATCTCTCTGCGTCTTTTTTTTGTCTGATCTTTGGTTGAGAGCAGATTCTGCAAATGGTGAAAAAAGTCTTGGATCAGTCTCTCTCTATCCTCAAGGATTTATCGCGTAACGATAAGCGCGCCCGTTTTTCTCCACTGAGTTTTTTATCCTGAGCTAAAAGCGGGACTGGTCATAATAAGCTCCAAAGTACGTGTATTGGTAGCTTAAAGGAGATACTTAGACTATAAGCGCGCGGTTGATTGAACTAGGGCAAGGTTGAAGTGAACTTAAAAGGCACCATTAACTTTTGTCTGGTGATAGTGCGACTCTTGTTTTGTAATGTTCCATGACATTGAAGACCACGTTTGTTAAATTACGAGAAAGGACCAACGTAAGCTGCAAAGAAATGGAATAACTTTGCCTTTGTTCACGTGTGCACCATTAACTTTTGTCTGGGTGATAGTGCGACTCTTGTTTTGTAATGTTCGATGACATTGAAGACCACGTTTGTTAAATTACGTGAAAGGACCAACGTAAGCTGCAAAGAAATGGAACAACTTTGCCTTTGTTCATCTGCTTTATTGGTCGTGAAGTTTTCCACTGTAAAACTGGTCGCAAACTATTTGTAAATGGTTCCACATCTATACACACAAAGACGACCTATACATACTTAGGAACGATCCTTGGGATATATATATCCCTTGTGTGGGATATATATTTTATCAGAAGCACATCACGGAATAACTTCTGATCATATAAAACCGTATGCTATTGTAGGCCAGTTATTTAACGGTTTATTGAATTTGATTATATAACGTGTGCTTTGATTGGTTGCTTAGCCGTTTTATATGTGCTGTGACGTCAGGTAACACTTGTTTGGCCTCATTCTATAAAATCTCTAAACCAGGTAGAAAACGGCAGTTTTGCGATTTCATAACCAGATGCAAACCGGCTCTCAAAGTAGTTAAGGAGAATTCGAAAAAACTTTAAAAGGTAGACATCGGCCTGTTCTTCCAGACTACCTCGAGTGCTTGCAGCTAGTTGCAGATGCACGTGtgccattttgtttctttctggtaGTTGATCTTTCACTGTCAAAGAGTGCAAAAGTGCGGACCGGATAAAAATACCAACTTATTATATACTTCTTGGAAAACAACGAGAAACAAACGGTTCCCTAGAAAAGTACTGTTTAACAGCTTTCATTTTGATTATTACACGATGGGATTTCAAAAGTGGAATCACATATGAACCAGCAGCTGTCTTTGGGAGTGAAAGAGCATTTGTACAACTGTGATGTGTAAACTTACATGGTATTTGTAAGGCCGTCTCCTATTGTGTAAATCAATACTGTAGCTGTAGATCTGTGCTTTCCGATGTGTGTTGGATAGACATGCAGTTTAAGGGAAGTGTAAGGTAATGAAAAGTACCGTAATA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02779 all species →	Transket_pyr	Transketolase, pyrimidine binding domain	Domain	Interproscan
PF02780 all species →	Transketolase_C	Transketolase, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005475 all species →	Domain	Transketolase-like, pyrimidine-binding domain	Interproscan
IPR027110 all species →	Family	Pyruvate dehydrogenase E1 component subunit beta	Interproscan
IPR033248 all species →	Domain	Transketolase, C-terminal domain	Interproscan
IPR009014 all species →	Homologous_superfamily	Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II	Interproscan
IPR029061 all species →	Homologous_superfamily	Thiamin diphosphate-binding fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11624 all species →	DEHYDROGENASE RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004739 all species →	Molecular Function	pyruvate dehydrogenase (acetyl-transferring) activity	Interproscan
GO:0005967 all species →	Cellular Component	obsolete mitochondrial pyruvate dehydrogenase complex	Interproscan
GO:0006086 all species →	Biological Process	acetyl-CoA biosynthetic process from pyruvate	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00162	PDHB, pdhB; pyruvate dehydrogenase E1 component subunit beta	EC:1.2.4.1	Diabetic cardiomyopathy	ko05415	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.