Gene detail

Detailed information of FUN_022084-T2 in Acropora pulchra

Genomic Location: ptg000016l:5310760...5315039
NR annotation: XP_044179686.1, ATP-dependent translocase ABCB1-like [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_022084-T2

ATGGTAAATTCAGTTCCTCATATTCTAGGGGCCACCGGTGGATTCTCATTTCCTGGGACTGGTGGACAGCTCCCAAGAATTTCAGGAATTCCAGCTGGAATCCAACCTCCGGAAATAACAGGGATACCAACCGGAATTAAATCTCCAGACGGACGTCTTCCGGCGATAACAGAGATAACAACAGGAATTAAATCTCCAGACGGAGAATTAGATGTATTGAAATCTGCAGAAGGACTTCCAGGAATACCAGGGAAACCAACAGGAATAACATTAAATATTCCTTCTTCCCAAGAACTTACGAAGGGATCGACGGGTGCTTCGTCTTTGCCAAGTCTACCAGGATTGACAGAGGGAATTCCAGGGTCTCGTTTTCTTAGATCTGTTGATGGAGGAATTAGTGAAGCAATGATTTCTGGTTCAGGAGTTGGAGGTGTTGCAGCAATGGTCGCTGGCATTGGAGCCATATCTACCACAGATGAACATCAACAGGAGCAATCATTACGTGGTTCCACATTAGTGCCGACGGGAGTAAATGATCAGCTTGATTGCACGCTTCCAATTGGTGTAACCCAAGGAATAGGAGTCCTACAACAGCAAGAAATGAGGCTTCCTCTAAACTTACCGAACTCAGACCTTTCGAATTCATTTCCTCCTATTCCGGGAGCCACCGGTGGATTCTCATTTCCTGGGACTGGTGGACAGCTCCCAAGAATTCCAGGAATTCCAGCTGGAATCCAACCTCCGGAAATAACAGGGATACCAACCGGAATTAAATCTCCAGACGGACGTCTTCCGGCGATAACAGAGATAACAACAGGAATTAAATCTCCAGACGGAGAATTAGATGTATTGAAATCTGCAGAAGGACTTCCAGGAATACCAGGGAAACCAACAGGAATAACATTAAATATTCCTTCTTCCCAAGAACTTACGAAGGGATCGACGGGTGCTTCGTCTTTGCCAAGTCTACCAGGATTGACAGAGGGAATTCCAGGGTCTCGTTTTCTTAGATCTGTTGATGGAGGAATTAGTGAAGCAATGATTTCTGGTTTAGGAGTTGGAGGTGTTGCAGCAGTGGTCGCTGGCATTGGAGCCATATCCACCACAGATGAACATCAACAGGAGCAATCATTACCTGGTTCCACATTTGTGCCGACGAGAGCAAATGATCAGCTTGATTGCACGCTTCCAATTGGTGTAACCCAAGGAATAGGAGTCCCACAACAGCATGAAATGAGGCTTCCTCTAAACTTACCGAACTCAGACCTTTCGTCGGTAGGTAAGTATCTGGGACCCAAAGTCCAGGAGACCATATCGTCAGTGTCTACCCTGGGTATGGCTCTGTATAATGGATGGAAAATGACTCTTGTGGTCCTTGCTGGCCTGCCAGTTATTGCATTAGCCAATCGCATTCAACAAAATGAAGCTGATGCTACAGTGGAACCAGAAGGAATAGAAGCACTGATGAAAACAAGCTTCAAGAAGATGGAGACTATTTCCTCTCTTGGGTTGGAAAATAAATTTGCGAAACAGTATAAGGATGCCATCTTCGAAAAATACAAGCATGCCCTTAAAAAGACCTTGGCTAGTGGCTTTGCTTTTGCTCTGGGCCAAGCTATGGTTTTCTTTATCTATGCAGGTGCACTAAGATTCGGCTGTTACCTCATATCCATAGACGACATGACACCAATTCAGGTGCTGGGTGTCTTAATGACGGTTTTGTTTGGTTCGTCTGCTACGTCCAGCACTCGTGCTCCTACGCGAGCGTCTGAAGACAACGATGACTCATTGAACAGACTATTCGATGACACAGTCACGGACGCCGAGGACCTCGCTGGCGATAAGATGGAAGAGGTAAAGGGAAATTTAAATTTTGAACACGTGGGATTGCCTGACCCTCTCCATAAGGGCCCGCCCTTGATGAGTCAGCTAAACATAAAGGTCAGCGGAGGACAAACCTTAGCCATTGTTCCTTTGGATGAAGGGACGTTAAATCCATTTGAACTTCTGGTGGAGCGATTTTATGATCCTGCCAAAGGAGGCCTGGTACGAAATGACTTCATCAACAACTGTTATTCTTCTGCTTTTTTCCTATATTTGGATCCAAATGCTTACTCCTGA

Transcript

FUN_022084-T2

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P21448	ATP-dependent translocase ABCB1 OS=Cricetulus griseus OX=10029 GN=ABCB1 PE=1 SV=2
P21447	ATP-dependent translocase ABCB1 OS=Mus musculus OX=10090 GN=Abcb1a PE=1 SV=3
P08183	ATP-dependent translocase ABCB1 OS=Homo sapiens OX=9606 GN=ABCB1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000779 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00664 all species →	ABC_membrane	ABC transporter transmembrane region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011527 all species →	Domain	ABC transporter type 1, transmembrane domain	Interproscan
IPR036640 all species →	Homologous_superfamily	ABC transporter type 1, transmembrane domain superfamily	Interproscan
IPR039421 all species →	Family	Type 1 protein exporter	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24221 all species →	ATP-BINDING CASSETTE SUB-FAMILY B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0140359 all species →	Molecular Function	ABC-type transporter activity	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan
GO:0042626 all species →	Molecular Function	ATPase-coupled transmembrane transporter activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_022084-T2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.