Gene detail

Detailed information of FUN_022110-T1 in Acropora pulchra

Genomic Location: ptg000016l:5515047...5538009
NR annotation: XP_029207940.2, ultraviolet-B receptor UVR8-like [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_022110-T1

CATCAGGACTAGGTTCTAGTGTTTTCTTTTCCCACATTTCCGTGCGCGCTGATTCGTGATGGCGGAAATAGGCAGCAACTCGAGGAATTTCCTCGCCTTTTGGTTGTATTACATCCTACAAGAATTGCATTAACTTGTGAATTGCTTCAAACGATGGCTAAAACAAAATAATGGAGGAAATCTCTTCTCTTACATTTTGGTGGTGAAACGCTCAAGAAAACAGATGGCGAAACCAGACGCCGTGAATTCTAGTAACTCTCGCCCCGCTACTCAGAACGGCACGGAAGCCGCTGTCTTGTCAGTGTTTGAAATGACCAAGGGCAGTGTCATGCTAAAAGCGAAACGTCATGGACCTCCTCAATTAAAAAGATTTGTTCTAACCAGAGATTTGTCACAAATTCAGTGGGGCGCTGGAAGAAGAATGTCGGAGAGGTCTGTGTCGATTGCTCAGATGACTCAGCTCAAAAAAGGACAGAAATCAAAAGTGTTCCAGAGTTGTCCCGTGCCCCAGAAGGAGTCAATATCTTTCTCTGTGGATTACAAGTTATCCCGCACTACAAATACTTTGGGTATTGTTTGTATGGATAAACAACAGTTTGAATTTTGGGTCAAGGGACTAGAGGCACTGATGAATGGTTTCAACGACAAAAATTCTGTTGATTCTTTGCACCAAAATGATCAAACGGACTGCAACATGACACCAGGATCGATAGAGAGTATGATGTGTTCTGGAGGAAACCGTTCAGATGAAGACAGATGCGACTTGTACACATGGGGTGATGGCACGACAGGAATGCTGGGACATGGTGAGAATGCTGAAGAAAATGTACCCAGAGTAGTGGATGCATTGCAGTCCAAGAACATTTCAACAGTAGCATGTGGAGTCAACCATACAATTGCTGTGACAAAGGAAGGTGAAGTGTTTTCATGGGGTTCAGGAGAAGGAGGAAAGCTTGGGCAAGGTCACCTTAGGGACAGATCAACGCCAATCAGAGTTGCTGAATTGAAGGACAAGAAAGTGATCAAAGTTGCATGTCACGACTATCACTCTTCTGCTGTTTGTGGTTCAGGTGAACTTTATACTTGGGGAAAACAGGGACCCCAATTGGGATATGAGAGTGAGGCAAGGAAAGTGATGCTGCCAAGATTAGTAGAAGGACTTTCAGAGCATAGAGTGACAGACGTTGCTTGTGGACTTTCTCACACCTTAGTTTGCACAAAAAATGGCCGGTGCTTTGCTTTTGGTGACAATCAATTTGGCCAGCTGGGGGTTACAGGAATCTCCCAGAGTTACAAACCAGTGAATGCAGTTGAGCTGGAAAGCTATCGCATAATATACGTCACTTGTGGATCTCATCACAATGCTGTCATATCAGATGCTGGTTTGTTATGGCTTTGGGGTGCAAATAAATTTGGACAGTTAGGACTTGATAATGCCTCATGTAGCTTCTCTTCAAGGCCATTTCTTTTATCTTCCACAACAGATCTGAGCAATCACACAATTATTGATGTAAGCTGTGGAACACAACACACAGTATTTTTATCAAAAAAGGGCAAGTTGTTTGGTATGGGTGATAACAGAGAAAACCAGCTTGGAATAAACCAAAGAGGAAAATCAGAAGAACCTGTTTCACAGGTTCCATTTCCAACCCGTATTCAGTTTTCCAAGGCAGCTAAACCAGTTCGGGTGTCCTGTGGAGCTTTTCACTCTGCCGCATTAACAGATTCTGGAGAAGTTTTTACATGGGGTAAAGGAAAATGTGGCCGGTTAGGCCATGGGGACAATAGAAACAGATCAGTACCTTGTGAACTGGACATGGATGGTAGGCGGGTGTATGCAGTGGAGTGCGGTAGTACACACACTGCTTGTTTAGTTACAATGACCTGGGTGTCAGATGACCTTATAAAGAACTGTATGGCCTGCAAAAACAAGTTCTCCTTGGTGAACAGAAAGCATCATTGTCACAACTGTAGAGGCGCTTTCTGTGCTTCGTGTACGTCCAAGCGAACTCAAGTCCCCGCTCTTCCTGGATACCCTCCGGCCAGTCTGAGACGAGTTTGCGACAAATGTTATTCTTCAATTTTAGAGCAATCTTCAAACCACAGCTGATGAAGCACCTTGTGTGCGCAGGAGGACGAAACAGTTGCTAAAGTACAATGGACGCGTCTTTTAAGTTAGTAGATGATGATACTGTTCAAATATGGCACAGAAATCGTTCGCAAGCCCTTCATTTTCCCCTATTCCCTTCTTATCCTTGCTCTTTTTCAGCTGTCTTTGGGATTTCATCCAACGTCCCCACCCCATACCCTCGTCCCTATGGGGGAAACGTCGCGAAACCTCAAAGGATGGTTGCGAAGGAGACTATTTTTACACTTGTAGTGATTGCATAGAAACACTATGATTAGCGTCTATAAAGTTGCAGCTTGACTTCATGCCGTTGTCAATAAATTCCCTGAGAGGTCGGGAATTTAAGTAATTGTATAACAAATAATGTGAAAGGGATAAAAAACTGACCGGCTTGACTAACAAAGAACCACTTTGTCTTGCCACATGATAACGTGCTCATGGTGATATATTTGAAACCTTAAATCTATGTCAGATGGTGATTACTTCGTTCTTTGATATAGATTGAATTCGCTGAAATTTTTTTCTATGAATATACTGTAAGTGAGTTAGGTCCTAACTGATGGCTGTATATTGGCCTCTTTCGTTTTTTTTTTTTTTGTTTTTTTTTTTTAAGATATCTGCACTCCGTTTCAGTTACTTATATTTTTTGTGCTCTTTGACAGCCCTCGATTTCGCTTTGATTAAAAAAAGACTTAGTATGTTGCTAATTTTGAAGAACTGTGGCGAGGAAAGGAAGATAGTCCGTGTAGGCACGCCTGGGCAACGACCGGTAATTAGTCGGAAGGCGCTCTGAGAAAGGAAAGCTGATTCACCTCGGGCTTTCTGATGGAATGAGTCCTTGTTACAGGTTGCCCAGGATTAGGTCCCTTTTGCTCGCTGACATAACAAAGCTTTCCAATAGTAATAATAAAAACAGAAAACGAAAAGAGTTGTATCATTGAAATAAAGCAAAACAGTCACGTCTGTAATTTTTGGTGGAAATGATCTCGCTTTTGTCATCCTCCTATTAGCTCCCCCGTTGTATCAAGAGCAAGTTAGTCTCTGGTCACTGCCCTACATTGGGGAGTGAATCTATGTTTCCCATGTAGTGCGTAGAGGTCGTTGACTGTAGATGTAGGTGAAGAGTGTAGTAAGTTCAACCAAAGTAAATGAAAATATCTTAAAAGTACATTAAAATGAACGTTATATATTTACAATATT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q947D2	PH, RCC1 and FYVE domains-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=PRAF1 PE=1 SV=1
Q9FN03	Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana OX=3702 GN=UVR8 PE=1 SV=1
Q15751	Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens OX=9606 GN=HERC1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004818 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01363 all species →	FYVE	FYVE zinc finger	Domain	Interproscan
PF00415 all species →	RCC1	Regulator of chromosome condensation (RCC1) repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009091 all species →	Homologous_superfamily	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II	Interproscan
IPR000306 all species →	Domain	FYVE zinc finger	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR000408 all species →	Repeat	Regulator of chromosome condensation, RCC1	Interproscan
IPR051210 all species →	Family	Ubiquitin ligases and GEF domain-containing protein	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR017455 all species →	Domain	Zinc finger, FYVE-related	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22870 all species →	REGULATOR OF CHROMOSOME CONDENSATION	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_022110-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.