Gene detail

Detailed information of FUN_022235-T1 in Acropora pulchra

Genomic Location: ptg000016l:6511903...6519393
NR annotation: XP_044179178.1, 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial-like [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_022235-T1

AATTGCAAAAGATCGACCAAAGAAAATTCTGTTGTACAATGAGTATTTTTAAGCTCTTTCGCTCCGCGTAATGAACGTGAAGAACCCAACATTTATCTTAGCTGGATCTACCTATCGTAATCTTGTTTTTCGAAGACAATGTGTAAATGTTACTCGTGGACAACACCGGCGAGTTGTCGTGACGGGTCTCGGTTTAGTTACACCTCTTGGGGTTGGTGTAACCACCGTCTGGCAAAATCTGGTGGTAGGAAAGTGTGGAATAACAAGAATAGAAAGTGAAGATTATGATAACATCCCTGCCAAAATTGCTGCATTTGTCCCCAGAGGTGAAAATCCTGGAAGACTGGATGAGAGCTACTGGCAGAGTGAACTTAAACTGGACAAGAGAAACACCACAACTGAAGGCCTATTTGCTGTTGTTGCTGCACACGAAGCCATTGCAGATTGTAAATGGATGCCTGAAGATCAATACCAGAGAGAAAGAACAGGTGTGTCTGTTGGCATGGGAATGACTGGGCTAAGTGATACTTTGGAGGCAGGAGATGCTCTCAACAGAAAGGGCTACAAAAGAGTGAATACATTTTATGTCCCAAGAGTTCTTTTAAACATGCCTGCAGGACTCATTAGTATGACATTTGGACTCCAGGGCCCAAATTATGCAGTCTCCACTGCATGCGCAGCTAGTGCACATGCTATTGGGGATGCCTATCGGATGATTAGTTACGGTGATGCTGATGTGATGGTCACTGGTGGAGTTGAAGCATGCATTGTGCCAGTGGCTATGGCTGGCTTTTGCAAAATGCGTGCATTGACCACAAAATTCAATGACAGGCCCCATGAGGCGTCACGACCGTTTGATAGTCAGAGATCTGGATTCGTTATGGGGGAAGGGGCTGGCATGATGATTTTAGAGGAACACGAACATGCCGTTAGTCGTGGAGCCAAGATTTACGCTGAAATTATTGGATATGGCCTTTCAGGGGATGCGTATCACATCGCTGCCCCGTCTGAGGGAGGGTACGGGGCATATTTAGCCATGAAAAATGCTCTAAGGGATGCGAGACTCGAACCACAAGACATCCATTACATTAACGCTCATGCTACGTCAACGCCAATTGGTGATGCCGGCGAAAATAATGCGATAAAAACTTTGATGGGTAGCCACGCCAAAAACATTAAAGTCTCATCCGTGAAAGGAGCTATCGGTCATTTGCTGGGTGCTTCGGGTGCCGTAGAAGCTATATTTACTGTGCTAAGCGTCGCCGAGGTAGGTTCTGTTACTGAGTAGATTCTTGTCAAAACCTGATCGGTGCAGGGATGGCGTAGTGGTGGGAGCACTTGCCTCCAGCAAATGTGAGCCGGGTTCGACTACTAGACTTGGCTTCACGTGTGGGTTGAGTTTGGTGATGAATTTCTAGTTTCTAAAGAAACTGTGGTGCTGCGTCGGTGGGAGAGATCAAAACAAAAATTTGGTTTTATCAAACGAGTTGATAAAGGTTGAATTACCACTGTGAAAGATTTAGAAAGAATTTGACTTTGTTGGTTCTCTACTCTGCGCCGAGAGGTTTTTCTCCCCTCTCCTCAAAAACCAACATTTTATTTATTTTATTATTTTATCATTATTTTTTTTTATTTATTTCAGTTAACAGTGTCCCCAGGTTGCTCCAGCGCTCTAAACTTCTAGCTACTTAAATAAAGTTCCTTTCTTTTTTTCCTTATAGGAATTTGTTATTATTATTATTATTATTTATTATTGTTAGCTATGGAAAGGAGGGGTGAACAAAGCGTCACAAAGTCCCCGCTAACTTTTTTCCGCCCCTAGAGCTTTTTCCCAGACTCATGCGGTGTAGAACACTAGACGATTAGTGTCAATGATAAAGACGATAGTGATGATGACGACAAATGCCCCATTTTGATAGGGCGTGGTTCCTCCAACTTTGAACCTGCATTCCGTGGATTCTGAAGAAGAGTTTGACTTAAATTACGTACCGCTAAAATCCCAGCAACTTCATGCGGAAAACGCTAGAACAGCACTGACGAACTCATTTGGTTTCGGTGGTACCAACGCCTCTTTGTGCTTCAGACAATTCATTGACAGTTAGTAAGTTCGGCATCCGATCAAACGAGGGAATATGGCCGAGGAAGACCCTCTTAGAACACGTGTATTACTCAATCAGAAGAAGCAAGGTTGTGGCGCCGATCCGCTGTGCTTATCATAATAGGGTTGGAGTGGTTGAACACTGTATTGCAAATATTCTTGCATGTGTCCCAAGCTTGGTACAGGACACGTGTCTACAATATTGGGAGAAATACGGTTAAGATGACCTCTTTGAACTTCATGCCGAGGACCAGAGTATTTTCATATCAAGCCTCAAACTTAAATAGAAATCCTGCTTACGATTTGTTGGTATTAGCAGTTTTAATTTCGGGGGGAAATGACGAGATTCGAAAAAAAACATTGACTTGAACAAGAGATATTTGCGACGAATTTACACCTGAAAAAGTTTTACTAAAGGGCCGCAACATGTATCATGATATCGTTTTACTAAATTTTGAAGCAAATGGGCCCGAGGGCAATAACATTAATTTCACTTGTATTTTCAGAGTTTCCCAAAATTGCCTCGCGTCTCGACAATTACTTGTTTATCACATAAAGGGCAAAACTTTTGAGGGAATTGCATTCGACCAAGGTGTCCGCGCGATGAAACCCTTTCAATGCCGTCACAAATGTCAAAACAAAGGTTTTTGTTGTCTGAAAACGCCGGTCCAATAGACAGTGCTTCGTTTAGTTTTTCTGTTCTCGCTACCGTTGTTTAGTTCCCCCATTAAAATTTCGTCGGCTTCCCCGAAACGGGAAGCCATTGTTGTAAAAAAAGTTTTATCGGCAATAAGGCTTCATTGCCAAGCAACTTATAACTTATCAGCATCAAGTAATCATTCCT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8L3X9	3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=KAS PE=1 SV=1
Q0VCA7	3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial OS=Bos taurus OX=9913 GN=OXSM PE=2 SV=1
Q9NWU1	3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial OS=Homo sapiens OX=9606 GN=OXSM PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002567 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02801 all species →	Ketoacyl-synt_C	Beta-ketoacyl synthase, C-terminal domain	Domain	Interproscan
PF00109 all species →	ketoacyl-synt	Beta-ketoacyl synthase, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014031 all species →	Domain	Beta-ketoacyl synthase, C-terminal	Interproscan
IPR014030 all species →	Domain	Beta-ketoacyl synthase, N-terminal	Interproscan
IPR020841 all species →	Domain	Polyketide synthase, beta-ketoacyl synthase domain	Interproscan
IPR000794 all species →	Family	Beta-ketoacyl synthase	Interproscan
IPR016039 all species →	Homologous_superfamily	Thiolase-like	Interproscan
IPR017568 all species →	Family	3-oxoacyl-[acyl-carrier-protein] synthase 2	Interproscan
IPR018201 all species →	Active_site	Beta-ketoacyl synthase, active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11712 all species →	POLYKETIDE SYNTHASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004315 all species →	Molecular Function	3-oxoacyl-[acyl-carrier-protein] synthase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006633 all species →	Biological Process	fatty acid biosynthetic process	Interproscan
GO:0016746 all species →	Molecular Function	acyltransferase activity	Interproscan
GO:0016747 all species →	Molecular Function	acyltransferase activity, transferring groups other than amino-acyl groups	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09458	fabF, OXSM, CEM1; 3-oxoacyl-[acyl-carrier-protein] synthase II	EC:2.3.1.179	Lipid biosynthesis proteins	ko01004	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.