Detailed information of FUN_022279-T1 in Acropora pulchra

Genomic Location: ptg000016l:7123132...7136994
NR annotation: XP_044178899.1, tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q7ZWS1tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Xenopus laevis OX=8355 GN=dus3l PE=2 SV=1
Q28BT8tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Xenopus tropicalis OX=8364 GN=dus3l PE=2 SV=2
Q3KRC5tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Rattus norvegicus OX=10116 GN=Dus3l PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003755 (this species only)
Transcription factor familyzf-CCCH · all TF in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01207
all species →		DusDihydrouridine synthase (Dus)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036855
all species →		Homologous_superfamilyZinc finger, CCCH-type superfamilyInterproscan
IPR000571
all species →		DomainZinc finger, CCCH-typeInterproscan
IPR013785
all species →		Homologous_superfamilyAldolase-type TIM barrelInterproscan
IPR035587
all species →		DomainDUS-like, FMN-binding domainInterproscan
IPR018517
all species →		Conserved_sitetRNA-dihydrouridine synthase, conserved siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45846
all species →		TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0046872
all species →		Molecular Functionmetal ion bindingInterproscan
GO:0003723
all species →		Molecular FunctionRNA bindingInterproscan
GO:0017150
all species →		Molecular FunctiontRNA dihydrouridine synthase activityInterproscan
GO:0008033
all species →		Biological ProcesstRNA processingInterproscan
GO:0050660
all species →		Molecular Functionflavin adenine dinucleotide bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K05544DUS3; tRNA-dihydrouridine synthase 3EC:1.3.1.89
Transfer RNA biogenesisko03016deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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