Gene detail

Detailed information of FUN_022288-T1 in Acropora pulchra

Genomic Location: ptg000016l:7232359...7247334
NR annotation: XP_029207740.2, partitioning defective 3 homolog isoform X1 [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_022288-T1

ATGAAAGTTACAGTTTGTTTCGAAGGAGTCTGCGTCATTGTTCCTTGTGGCAATGGCGACCTCACTGTGAGAGACCTTATACAACGCTCCATTTCACGATATCGCAAAGCTACCAATAAGCCCGCCGATGAATTTATTCAAGTTAATTTTTTGGAGACCTCTGATGACCATGGCATTCTCGATCCAGACGACTTGCTTTGCGATGTTGTAGATGATAAAGAAAAGCTGGTTGCAATCTTTGAAGAAGGTTCAACTGTCCATCAAGTGACACAGAATGGAGGATGTAGAACAAGGGATTCATCAACTGGAACTGCAAGCCCAGATCTCTCTGCGCCAGAAGATGAGTCACCAAAATTTATAAAGGAGCCACAGTCTATGAAATCAATTATCAATAAGATTGAAAACACCAATGGAGGAATAAAAACATCAACAAGAGCAAACAGGAGTCCTCCACCACCAGTTGCTCCAAAACCTGTGAGGGCTGTGCGGCATGTTAGTGTTAGTAGCAGAACTTCATTCAATGAATCTATACCCTCTGAGGATTCTGGGATATCTATGCGCGATGACCAGGACAGGCACAGGAATGGTTCTGACTCGTCTAAGTCTGAGATCAGCGAGAACGTTCCTTTGAAACAAGCCATCTATAGGAGCAAATCAGGAGAAACCACTTTTGCAGCAGTGGCCATGCCCATTAGAAAGGCATTATATAATGGTCATTTGAATGGCAACAAAAGTCGTTTGTCTTCAAATAGTTCGGACCAAGCAGATGCCGAGCACAGTGAAGCTGAGGATGAAGGTTTTTCTCTAGGGCGTAACTCAATAAGGAAGTCCATGTTTGCTGACAGCCCAATGATGGACAGATGGGCTGAGTTACAGGAGAAAAGGTTGTTTGAGGTAAATAATAACAGAGAAGAACAAGTGAGTAATGTGACATCCCCTTCAGAGCCCAGTTCCAATGAACCTGACTTTGGTGTGAAATATGATGAAAAGGATTCTATTACTTCAGAAAGCAGCGGAGAACCTGATATGCTTACAATAGAGTTGAAACGAGATAATTCCATTGAAGGCTTGGGTTTCACAGTCGCTGGATACCGTACGGCAGATGGCAGGGAGCTTGGTCTCATTGTTCGTGACATTTCACCAAGTGGTTGTGCTGCAAGAGATGGTAGACTTGAGATTGCTGACAGGATTGTTGAAGTAAATGGATGGAGTCTCATGGATATCCCAAACGAAAGAGCTGAAGAAATTTTTGCCGCAGCTATCAAGTCGCCAACGGTCAGTCTTGGTATCTCGCGGTCTCATACTTTTGTACCTGGAAAAAACATTGCTTATCCGCCAAAAGAAGAAATCATCCAAGCAATACCCAAGTTAGACATTGACGAACCTAATCAAGAAGAACAATCACCAAGACAAGTGTTCCCCGTGACACCCCAGAAATTTGCTGGGTCGCCTTCCATTGCTGACTCCAGTTTCAAGAAAGTTAACAAGAGAATTCTGGTGGAGTTGACGAAAGGTAATGATGGTCTTGGGTTTAGCATCACAACACGTGATAATCCCGCGGGTGGAAATGCACCGATATTTGTGAAGAGCATTCTTCCGAAAGGTGCAGCAATCATTGAAGGACAACTGAGGGGCGGAGATCAAATTATTGAGGTTAATGGACAAAAAATGAATGGGAAGAGTCAGCCCGAAGCTGTGGATATTTTGCGAAACACTCGCGGCCTGGTAAAGCTTCTGGTTCAAAGAGAGGAAGTCGTCCAATCGCCTCGTAGTCCGGCAATAGAGGTCAACGAAGACAGCCTACGTCACTTACGGGAACAGGGCCTTCAAGTACTCACGTTCAAAATTCCTTTGGACTTATCCGGCGCAGCGGGCCTGGGGGTGAGTGTGAAAGGCAAAAGCCACGGAACTCCTGACCAGGGTAGAGACAGTCCTCAAGACAAAGGGATCTTTTGCAAGTCCATCATACCTGGTGGCGCTGCTGCAAAAGATGGCCGCCTTCGACCTGATGATCAACTTTTACGAGTGAACGGCAAATCGTTGGTTGGATTAACAAACCAAACAGCGATGGGGACCCTTAGGCTCGCCATGCAGTCCACGCGACCTGGTCAAGCTTTCATTGACGTCACTATTGCGCGAGCACAGGAGGACACTCTCTCTCCCCCTGGGGCCTTACTTAACAGCCGTTCCCTGGAAAACCTCAATGCGCCTGATCAAGAGAGACCGATTGAAGCTGTGTCCGAGGCAAAGGCGGTAGACGAACCACAAAACGAAAGCTCCGAGGCCGAGGGTGCTCCCCAAAGAGCTAGACTTTCCAGCGGCGAGGAGGATCGATTTGATGGCCCGGCCTTGAACAAGAACTTAGCACCCCTGCGCCCAAGAAACGCTGTTCAGCGGAACGATTCCTATTGTGTAGCAGTGAACAAAAGTAGGGGGTCGGGCGGCCTGTTTAACGGTCCTTTGAGGCAACGCCCCATTCACAGACCCAGTCCCTTGGCCATGGAAAATGGCCGACCGCAAACAATCCGTGCCAATGCCTCGGCAATGACGTCAACACCAGTCGAGGCTTCAAAACCTGAGGATGCTCCAAGTGATCCTACCGACAGGCCCACTAGTACAGTTGCTATGCCTACTCCCCCGTTAGGGAGCACTGAAGAGAGATCCTCGGCTCCTTCTAGTCCTTCAATGGGCCCTTCTCAAGAACTTCCCCCTCAGCCCCCACCTAGGTGGGACTCTGAAGCGGATACATCGAAGGTGAACTTCACGTTGCCTTCGGGGCTCCAGTTGCGGCTTAAACCGCCGGATGATCAAAGGCTCTTGGGTGTAGGGACCACATTAAACGGGACACCAGCTCCTCCCCCTCCTTCCCAGTTCTCGAACCAGTCACCCACCATGGAGCTTCCGCCGTCATACGACCAGGCATTGGCCAGGCTGGGAAAGAGCCAGCACACTTCAGTGAGTTCAGAACCCTCCACCCCTAGCAGGGAACAGCGGAAGTCGTGGGGTGAAGACACGAATGGTGATACTAATATCATTCGACCACCAAGCCCTTTCACCACAGAAGACCAGACCCCATTTAAAAGAGATGGATTTGGAAGGATGTCAATGTCAGAGAAAAGAGGAAGAGCTGCATTAGATGCGAGACAGTCCGAGTACTTCATTAAACGCGAACAAGATAGAGAAGCTCAAGATAACGGCTCAGAAAAAGACGAAGAAGACGAAGAAAAGGAATCGGATTCATCAGGTGTACATCCTCCTCTCCGAAGAGCTGATTCCGAAGAGTTGTTGCGAGAGCAGTTCAACAAAGGATCTCCAGAAGAAAGGCGGTCACTTCCCCATCGAATACATAAAAGCAAATCAACTGGCCAACTCAAGCTTCTTGCAACCAAAGACTCTAAAAACACAAGATCGAAAAGTAATGACAATCTTAGTTTTACAGATGCTGTGGAAAATGCCAACCTTCAAGGTGAAGTACCGAATGGTCACGCACGCGTCAGTCCCACTGATGAGGAAGTTCCCATAACAATGAGAAGTAACGCAGACTTCACCGCTGTGCAACAGAAGCTAGCAGTCAAGAAACCTTTTTACAAAGGACTATTTAAGATGGGAAAAGCTAAACGTGGGGATTACAGCCTCACGAACAACGAGAGTCCCGCGTTTAAGCACACTTATAACAAAGAGGCTCTGATCGACTTCCCAGCGGAGCAACGTTACCGACAACTTGTTAATCGCTATGGCCAAGAAAGAGCCTCTGATGGCGTCAGCTCTCTTCCGTCACGCGGTAAAAAGAAACACGAAGCTGCAAAGGAAAGAGCCGCCCCGATAGAAAGACGAACTCCGCCGCCTCCGCCGGCTATGAAAGTCAGCCGAGTGACCGTCTCCGCTCCTACGAGGGTCTAA

Transcript

FUN_022288-T1

TAACAGAATTGTTGCGACTCGAGGACTCGGTCGTTGGGGAATGAATTCTCGTTAAGTTGTTATGTTGTGATGTTTGCTGGAAGAATAAGGTTGGATCTAACACGTATAAAATGAAAGTTACAGTTTGTTTCGAAGGAGTCTGCGTCATTGTTCCTTGTGGCAATGGCGACCTCACTGTGAGAGACCTTATACAACGCTCCATTTCACGATATCGCAAAGCTACCAATAAGCCCGCCGATGAATTTATTCAAGTTAATTTTTTGGAGACCTCTGATGACCATGGCATTCTCGATCCAGACGACTTGCTTTGCGATGTTGTAGATGATAAAGAAAAGCTGGTTGCAATCTTTGAAGAAGGTTCAACTGTCCATCAAGTGACACAGAATGGAGGATGTAGAACAAGGGATTCATCAACTGGAACTGCAAGCCCAGATCTCTCTGCGCCAGAAGATGAGTCACCAAAATTTATAAAGGAGCCACAGTCTATGAAATCAATTATCAATAAGATTGAAAACACCAATGGAGGAATAAAAACATCAACAAGAGCAAACAGGAGTCCTCCACCACCAGTTGCTCCAAAACCTGTGAGGGCTGTGCGGCATGTTAGTGTTAGTAGCAGAACTTCATTCAATGAATCTATACCCTCTGAGGATTCTGGGATATCTATGCGCGATGACCAGGACAGGCACAGGAATGGTTCTGACTCGTCTAAGTCTGAGATCAGCGAGAACGTTCCTTTGAAACAAGCCATCTATAGGAGCAAATCAGGAGAAACCACTTTTGCAGCAGTGGCCATGCCCATTAGAAAGGCATTATATAATGGTCATTTGAATGGCAACAAAAGTCGTTTGTCTTCAAATAGTTCGGACCAAGCAGATGCCGAGCACAGTGAAGCTGAGGATGAAGGTTTTTCTCTAGGGCGTAACTCAATAAGGAAGTCCATGTTTGCTGACAGCCCAATGATGGACAGATGGGCTGAGTTACAGGAGAAAAGGTTGTTTGAGGTAAATAATAACAGAGAAGAACAAGTGAGTAATGTGACATCCCCTTCAGAGCCCAGTTCCAATGAACCTGACTTTGGTGTGAAATATGATGAAAAGGATTCTATTACTTCAGAAAGCAGCGGAGAACCTGATATGCTTACAATAGAGTTGAAACGAGATAATTCCATTGAAGGCTTGGGTTTCACAGTCGCTGGATACCGTACGGCAGATGGCAGGGAGCTTGGTCTCATTGTTCGTGACATTTCACCAAGTGGTTGTGCTGCAAGAGATGGTAGACTTGAGATTGCTGACAGGATTGTTGAAGTAAATGGATGGAGTCTCATGGATATCCCAAACGAAAGAGCTGAAGAAATTTTTGCCGCAGCTATCAAGTCGCCAACGGTCAGTCTTGGTATCTCGCGGTCTCATACTTTTGTACCTGGAAAAAACATTGCTTATCCGCCAAAAGAAGAAATCATCCAAGCAATACCCAAGTTAGACATTGACGAACCTAATCAAGAAGAACAATCACCAAGACAAGTGTTCCCCGTGACACCCCAGAAATTTGCTGGGTCGCCTTCCATTGCTGACTCCAGTTTCAAGAAAGTTAACAAGAGAATTCTGGTGGAGTTGACGAAAGGTAATGATGGTCTTGGGTTTAGCATCACAACACGTGATAATCCCGCGGGTGGAAATGCACCGATATTTGTGAAGAGCATTCTTCCGAAAGGTGCAGCAATCATTGAAGGACAACTGAGGGGCGGAGATCAAATTATTGAGGTTAATGGACAAAAAATGAATGGGAAGAGTCAGCCCGAAGCTGTGGATATTTTGCGAAACACTCGCGGCCTGGTAAAGCTTCTGGTTCAAAGAGAGGAAGTCGTCCAATCGCCTCGTAGTCCGGCAATAGAGGTCAACGAAGACAGCCTACGTCACTTACGGGAACAGGGCCTTCAAGTACTCACGTTCAAAATTCCTTTGGACTTATCCGGCGCAGCGGGCCTGGGGGTGAGTGTGAAAGGCAAAAGCCACGGAACTCCTGACCAGGGTAGAGACAGTCCTCAAGACAAAGGGATCTTTTGCAAGTCCATCATACCTGGTGGCGCTGCTGCAAAAGATGGCCGCCTTCGACCTGATGATCAACTTTTACGAGTGAACGGCAAATCGTTGGTTGGATTAACAAACCAAACAGCGATGGGGACCCTTAGGCTCGCCATGCAGTCCACGCGACCTGGTCAAGCTTTCATTGACGTCACTATTGCGCGAGCACAGGAGGACACTCTCTCTCCCCCTGGGGCCTTACTTAACAGCCGTTCCCTGGAAAACCTCAATGCGCCTGATCAAGAGAGACCGATTGAAGCTGTGTCCGAGGCAAAGGCGGTAGACGAACCACAAAACGAAAGCTCCGAGGCCGAGGGTGCTCCCCAAAGAGCTAGACTTTCCAGCGGCGAGGAGGATCGATTTGATGGCCCGGCCTTGAACAAGAACTTAGCACCCCTGCGCCCAAGAAACGCTGTTCAGCGGAACGATTCCTATTGTGTAGCAGTGAACAAAAGTAGGGGGTCGGGCGGCCTGTTTAACGGTCCTTTGAGGCAACGCCCCATTCACAGACCCAGTCCCTTGGCCATGGAAAATGGCCGACCGCAAACAATCCGTGCCAATGCCTCGGCAATGACGTCAACACCAGTCGAGGCTTCAAAACCTGAGGATGCTCCAAGTGATCCTACCGACAGGCCCACTAGTACAGTTGCTATGCCTACTCCCCCGTTAGGGAGCACTGAAGAGAGATCCTCGGCTCCTTCTAGTCCTTCAATGGGCCCTTCTCAAGAACTTCCCCCTCAGCCCCCACCTAGGTGGGACTCTGAAGCGGATACATCGAAGGTGAACTTCACGTTGCCTTCGGGGCTCCAGTTGCGGCTTAAACCGCCGGATGATCAAAGGCTCTTGGGTGTAGGGACCACATTAAACGGGACACCAGCTCCTCCCCCTCCTTCCCAGTTCTCGAACCAGTCACCCACCATGGAGCTTCCGCCGTCATACGACCAGGCATTGGCCAGGCTGGGAAAGAGCCAGCACACTTCAGTGAGTTCAGAACCCTCCACCCCTAGCAGGGAACAGCGGAAGTCGTGGGGTGAAGACACGAATGGTGATACTAATATCATTCGACCACCAAGCCCTTTCACCACAGAAGACCAGACCCCATTTAAAAGAGATGGATTTGGAAGGATGTCAATGTCAGAGAAAAGAGGAAGAGCTGCATTAGATGCGAGACAGTCCGAGTACTTCATTAAACGCGAACAAGATAGAGAAGCTCAAGATAACGGCTCAGAAAAAGACGAAGAAGACGAAGAAAAGGAATCGGATTCATCAGGTGTACATCCTCCTCTCCGAAGAGCTGATTCCGAAGAGTTGTTGCGAGAGCAGTTCAACAAAGGATCTCCAGAAGAAAGGCGGTCACTTCCCCATCGAATACATAAAAGCAAATCAACTGGCCAACTCAAGCTTCTTGCAACCAAAGACTCTAAAAACACAAGATCGAAAAGTAATGACAATCTTAGTTTTACAGATGCTGTGGAAAATGCCAACCTTCAAGGTGAAGTACCGAATGGTCACGCACGCGTCAGTCCCACTGATGAGGAAGTTCCCATAACAATGAGAAGTAACGCAGACTTCACCGCTGTGCAACAGAAGCTAGCAGTCAAGAAACCTTTTTACAAAGGACTATTTAAGATGGGAAAAGCTAAACGTGGGGATTACAGCCTCACGAACAACGAGAGTCCCGCGTTTAAGCACACTTATAACAAAGAGGCTCTGATCGACTTCCCAGCGGAGCAACGTTACCGACAACTTGTTAATCGCTATGGCCAAGAAAGAGCCTCTGATGGCGTCAGCTCTCTTCCGTCACGCGGTAAAAAGAAACACGAAGCTGCAAAGGAAAGAGCCGCCCCGATAGAAAGACGAACTCCGCCGCCTCCGCCGGCTATGAAAGTCAGCCGAGTGACCGTCTCCGCTCCTACGAGGGTCTAATGTTTTCAGAACGTGAGATTTTTTGTAGGCGTACGTGATCAGAATCACCAACCATGTGTTTGGTGTTTTGGGCTCGTGATCTCGATGAAAAGGTTTGCAATTAAATGGGATTTTTTAGTGACACAAAATAGCGATAGGGTAGGGTGACCTATGG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Z340	Partitioning defective 3 homolog OS=Rattus norvegicus OX=10116 GN=Pard3 PE=1 SV=1
Q99NH2	Partitioning defective 3 homolog OS=Mus musculus OX=10090 GN=Pard3 PE=1 SV=2
Q8TEW0	Partitioning defective 3 homolog OS=Homo sapiens OX=9606 GN=PARD3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002915 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan
PF12053 all species →	Par3_HAL_N_term	N-terminal of Par3 and HAL proteins	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR052213 all species →	Family	Partitioning defective 3 homolog	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR021922 all species →	Domain	Par3/HAL, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16484 all species →	PARTITIONING DEFECTIVE 3 RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000226 all species →	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0005912 all species →	Cellular Component	adherens junction	Interproscan
GO:0005938 all species →	Cellular Component	cell cortex	Interproscan
GO:0007155 all species →	Biological Process	cell adhesion	Interproscan
GO:0008104 all species →	Biological Process	protein localization	Interproscan
GO:0016324 all species →	Cellular Component	apical plasma membrane	Interproscan
GO:0030010 all species →	Biological Process	establishment of cell polarity	Interproscan
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0043296 all species →	Cellular Component	apical junction complex	Interproscan
GO:0045197 all species →	Biological Process	establishment or maintenance of epithelial cell apical/basal polarity	Interproscan
GO:0051660 all species →	Biological Process	establishment of centrosome localization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04237	PARD3; partitioning defective protein 3	-	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.