Detailed information of FUN_022323-T1 in Siderastrea siderea

Genomic Location: contig_20:5867468...5876445
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
No Pfam domain signature was detected for FUN_022323-T1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR026106
all species →		FamilyMicrotubule-associated protein 9Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14739
all species →		MICROTUBULE-ASSOCIATED PROTEIN 9Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000235
all species →		Cellular Componentastral microtubuleInterproscan
GO:0000281
all species →		Biological Processmitotic cytokinesisInterproscan
GO:0008017
all species →		Molecular Functionmicrotubule bindingInterproscan
GO:0051225
all species →		Biological Processspindle assemblyInterproscan
GO:0090307
all species →		Biological Processmitotic spindle assemblyInterproscan
GO:1902412
all species →		Biological Processregulation of mitotic cytokinesisInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_022323-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_022323-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
11TPM > 0
7Conditions
40.6Max TPM
2.8Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 2 1.18 19.00
holobiont · low.pH Control.temp 20 1 1.23 24.67
holobiont · control.pH_high.temp 20 2 0.74 10.09
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 4 36.34 40.55
unannotated 1 1 16.43 16.43
live coral tissue/skeleton 1 1 13.28 13.28

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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