Gene detail

Detailed information of FUN_022388-T1 in Dendrogyra cylindrus

Genomic Location: contig_44:250676...268023
NR annotation: XP_020629906.1, nuclear cap-binding protein subunit 3-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

FUN_022388-T1

CGTGTACTTGAACACGAACGTATTACCAGTTCAATCCAAGATGGAGTATGGGGAAAAGAAAGTAGAAAATATCCGTGCAGATGATAGCGACAAAGAAGAGAAAGATCTCCCTGTCACTTTTGAAGCATTGGAGAGAAAGTCCAGGAGAGCAAAAAGATTTGAACTTCAGTCAAAACACAAGGAGGATACCCATTGTGCCATGTTTCCATCTATTGATGCCAAAGAGCTCCCAACAATATCTGttgATGAAGGCAGACTATATGCTTCTGTAATTCATGGTGTGGATAATATGAGTACAAAAGATGTGTTTGCCTATTTCAGTGATTTTCCTCCTGGGTCTGCTGTGGAATGGATTGATGACTCTTCAAGCACGAaaaattttgaagaaaagtgTTTAAATGCTGTGGGTGAGTCCAAAGGAATTGGTCCAGTTGAGCAGGCAGACGATGTACCACAGgGCCTGTGTATTTGTCTCGCCTGTGGTGCCATGGTAGGATATCTGAAGTCTCATGCTGAGAGTCATTTCCATGCAACTGGACACATTTCTTCTTTAGAGCTGTTTAGTCAGCGAGTTTGGGACTTCTCAGAAGAAAACTTTACATCTAGTTTGAGGAACGGAGGACCGAAGGAACAAAGTAACGGCAAACTTGACAAATATGACTCGGGACAACAGAGCACATACCCACCTACAGACGAAATGGAGTGGCAAAGATTTTTTTTCGAAGATAAAAAATCACAAATTGAAAACGATGCAGCCGAAAAGCGGAGTTCCAGCGAGGACCTCTTAAAGAAAGCATTGGACAAACTTGAACAGTTGAAGTTGAAACTTTCTGAAgccgaagaagaaaagaagaagaaaaaagaagagTACACACAGGTCGTAACTAAGGCTGTACAGCTTTCCAGTGATCTTAAGAAAATGCGCGAGttaaACAAGCGTTTGTCAGAAAATCAAATGTCGCAGAAAGAGAGGTTGAAGCAAATGGAAGCCAAGCGTGAAGCAGACCAAGAGGCGAACAGACAAGTATCACCCTATCActgtttataatccatcaaatatttttcgcgtgCGCGATTGGTCTAAGCACGTCACGTGACGTAgcaaaaactggggaatatcagatgatatccCCCAAGTGGTTTTCCCCAGTTTCCAAATGTTGCGACTTACGTTCGCGTGTTATGTTTTCTTCCCAAGTAAATTGTTAAATCTTGGCGtgactgcccctttaacttcGCGGCTAAAAACGGAACAAAGGTGGAGGGCACAGCCTTGCACGTTAAAACTCGGCAAACTAGATAACTGATATTTACACTCTTACTCTATCAGGAAATAAGTGATCTTAAGGAACAACTTAAAGACCTCCGGTATCACCTGAAGACACAACAAGCGATAGCGAGCGCACCTGATGAAACCAGACAGGAACTTCAAGATGGCCGAATAATCGTGAGTGAAGGATCGTCTCCAACGCATCATTTAAGGAAACCTCGacgaaaacagaaaaaaaggaaataaccCAGTGCCACAGGACTGGTGCACAGGGCTGGTAGTACTTGTAAAAATGGCTTTAGATATAGAAGTGCAGCCCTCTGAAACAGCCTACCCTGTAATCTTCGGGAGAAAAAATCTCTCAGCCAAGATTTCTAAATGTGATTTAGCATGTGATTTTAGCCATTCTCAATATTATTTTAAATATAATGATCAAAAATGGgcgaaaacaaaagattcgCACAACCTTAAAATTCTCCCCTCCCCCGTATACGTTAACGCTGGTTGCTATTTTCGGTTGAACCCCCGAGGCCGCTATATTAGGTAGCTCGGTTTATGCCGCGGTTCAGGCACAAAAATCAAAtacaaaaatttaaaacttAATAAGACAAAAATATCTATCAATAAGTAATGCGTCGCTATTTAGGGAAGGTATTAATTTGTATTGAGAGATTCAAGCTAAGGTCTGATGAATGTTAGGAAGGGAAATTGATTACttagttatattttatttattcgctTTCGCTGATAAAAAAACGAAATCCAACGTAGAAAACTAGAAATTATTGTTTTGGTTGGTTAATGTTCCAGCTCATTAACCATAACTAGTATctgttgtttctgttgttttgtttattattttaataGGCATGTAATTGAAAATACAACCTCACAAAGCTGTAATCCACTTGTAGATTTTTTAAAGTAATTAGTGTTTTAGAGCTGGGATTACCTTTATCCGATAGAAGTTGGCAAAGTTTGttttaacgtttttttttatgtttgttttaaCGTTTTTCCTTATGATGTAATTTGTATCGCGTTATAGCTCACTCTTTAATAGTACTGCACTGATTAAAACTC

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|ZnF\|ZnF_UBP

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02148	zf-UBP	Zn-finger in ubiquitin-hydrolases and other protein	Domain	Interproscan
PF10309	NCBP3	Nuclear cap-binding protein subunit 3	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001607	Domain	Zinc finger, UBP-type	Interproscan
IPR019416	Family	Nuclear cap-binding protein subunit 3	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24007	BRCA1-ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0000340	Molecular Function	RNA 7-methylguanosine cap binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0007265	Biological Process	Ras protein signal transduction	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan