Detailed information of FUN_022459-T1 in Siderastrea siderea

Genomic Location: contig_20:7836200...7844223
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
No Pfam domain signature was detected for FUN_022459-T1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR024849
all species →		FamilyShootin-1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46606
all species →		SHOOTIN-1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0031252
all species →		Cellular Componentcell leading edgeInterproscan
GO:0044295
all species →		Cellular Componentaxonal growth coneInterproscan
GO:0048812
all species →		Biological Processneuron projection morphogenesisInterproscan
GO:2001224
all species →		Biological Processpositive regulation of neuron migrationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_022459-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_022459-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
11TPM > 0
7Conditions
228.3Max TPM
10.7Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 1 9.34 186.70
holobiont · low.pH Control.temp 20 1 2.50 49.92
holobiont · control.pH_high.temp 20 2 15.57 174.76
holobiont · control.pH Control.temp 19 1 12.02 228.29
Whole organism 4 4 24.23 27.38
unannotated 1 1 17.13 17.13
live coral tissue/skeleton 1 1 22.85 22.85

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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