Detailed information of FUN_022465-T1 in Siderastrea siderea

Genomic Location: contig_20:7937626...7975757
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00618
all species →
RasGEF_NRasGEF N-terminal motifDomainInterproscan
PF00617
all species →
RasGEFRasGEF domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036964
all species →
Homologous_superfamilyRas guanine-nucleotide exchange factor, catalytic domain superfamilyInterproscan
IPR001895
all species →
DomainRas guanine-nucleotide exchange factors catalytic domainInterproscan
IPR000651
all species →
DomainRas-like guanine nucleotide exchange factor, N-terminalInterproscan
IPR023578
all species →
Homologous_superfamilyRas guanine nucleotide exchange factor domain superfamilyInterproscan
IPR029899
all species →
FamilyKinase non-catalytic C-lobe domain-containing protein 1Interproscan
IPR011019
all species →
DomainKIND domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21560
all species →
VERY KIND PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005085
all species →
Molecular Functionguanyl-nucleotide exchange factor activityInterproscan
GO:0007264
all species →
Biological Processsmall GTPase-mediated signal transductionInterproscan
GO:0030425
all species →
Cellular ComponentdendriteInterproscan
GO:0032045
all species →
Cellular Componentguanyl-nucleotide exchange factor complexInterproscan
GO:0043025
all species →
Cellular Componentneuronal cell bodyInterproscan
GO:0048814
all species →
Biological Processregulation of dendrite morphogenesisInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_022465-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_022465-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
9TPM > 0
7Conditions
9.6Max TPM
0.6Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 1 0.35 7.08
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 2 0.25 3.32
Whole organism 4 4 4.75 6.36
unannotated 1 1 7.31 7.31
live coral tissue/skeleton 1 1 9.59 9.59

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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