Detailed information of FUN_022526-T1 in Siderastrea siderea

Genomic Location: contig_20:9058950...9134549
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF20408
all species →
Abhydrolase_11Alpha/beta hydrolase domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR026555
all species →
FamilyKAT8 regulatory NSL complex subunit 3/Testis-expressed sequence 30 proteinInterproscan
IPR029058
all species →
Homologous_superfamilyAlpha/Beta hydrolase foldInterproscan
IPR046879
all species →
DomainKANL3/Tex30, alpha/beta hydrolase-like domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13136
all species →
TESTIS DEVELOPMENT PROTEIN PRTDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0043981
all species →
Biological Processobsolete histone H4-K5 acetylationInterproscan
GO:0043982
all species →
Biological Processobsolete histone H4-K8 acetylationInterproscan
GO:0043984
all species →
Biological Processobsolete histone H4-K16 acetylationInterproscan
GO:0044545
all species →
Cellular ComponentNSL complexInterproscan
GO:0045944
all species →
Biological Processpositive regulation of transcription by RNA polymerase IIInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K16719KANSL3, RCD1; regulatory NSL complex subunit 3-Chromosome and associated proteinsko03036deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_022526-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
36TPM > 0
7Conditions
322.7Max TPM
19.1Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 3 4.92 41.69
holobiont · low.pH Control.temp 20 7 26.97 322.66
holobiont · control.pH_high.temp 20 8 16.59 88.83
holobiont · control.pH Control.temp 19 12 31.06 198.32
Whole organism 4 4 12.72 15.76
unannotated 1 1 7.49 7.49
live coral tissue/skeleton 1 1 9.11 9.11

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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