Detailed information of FUN_022527-T1 in Siderastrea siderea

Genomic Location: contig_20:9134169...9144428
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF03630
all species →		FumbleFumble FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR004567
all species →		FamilyType II pantothenate kinaseInterproscan
IPR043129
all species →		Homologous_superfamilyATPase, nucleotide binding domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12280
all species →		PANTOTHENATE KINASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004594
all species →		Molecular Functionpantothenate kinase activityInterproscan
GO:0005524
all species →		Molecular FunctionATP bindingInterproscan
GO:0015937
all species →		Biological Processcoenzyme A biosynthetic processInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0005829
all species →		Cellular ComponentcytosolInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K09680PANK1_2_3, CAB1, coaW; type II pantothenate kinaseEC:2.7.1.33
Pantothenate and CoA biosynthesisko00770deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_022527-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
6TPM > 0
7Conditions
13.6Max TPM
0.7Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 4 8.92 13.60
unannotated 1 1 10.12 10.12
live coral tissue/skeleton 1 1 10.86 10.86

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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