Detailed information of FUN_022663-T1 in Acropora pulchra

Genomic Location: ptg000016l:12122262...12125280
NR annotation: XP_015752184.1, PREDICTED: exosome complex component RRP41-like [Acropora digitifera]
Species Acropora pulchra · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q7YRA3Exosome complex component RRP41 OS=Bos taurus OX=9913 GN=EXOSC4 PE=2 SV=3
Q9NPD3Exosome complex component RRP41 OS=Homo sapiens OX=9606 GN=EXOSC4 PE=1 SV=3
Q921I9Exosome complex component RRP41 OS=Mus musculus OX=10090 GN=Exosc4 PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001823 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01138
all species →		RNase_PH3' exoribonuclease family, domain 1DomainInterproscan
PF03725
all species →		RNase_PH_C3' exoribonuclease family, domain 2DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001247
all species →		DomainExoribonuclease, phosphorolytic domain 1Interproscan
IPR020568
all species →		Homologous_superfamilyRibosomal protein uS5 domain 2-type superfamilyInterproscan
IPR015847
all species →		DomainExoribonuclease, phosphorolytic domain 2Interproscan
IPR050080
all species →		FamilyRibonuclease PHInterproscan
IPR027408
all species →		Homologous_superfamilyPNPase/RNase PH domain superfamilyInterproscan
IPR036345
all species →		Homologous_superfamilyExoribonuclease, PH domain 2 superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11953
all species →		EXOSOME COMPLEX COMPONENTInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000176
all species →		Cellular Componentnuclear exosome (RNase complex)Interproscan
GO:0000177
all species →		Cellular Componentcytoplasmic exosome (RNase complex)Interproscan
GO:0005730
all species →		Cellular ComponentnucleolusInterproscan
GO:0016075
all species →		Biological ProcessrRNA catabolic processInterproscan
GO:0034427
all species →		Biological Processobsolete nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'Interproscan
GO:0034475
all species →		Biological ProcessU4 snRNA 3'-end processingInterproscan
GO:0071028
all species →		Biological Processnuclear mRNA surveillanceInterproscan
GO:0071051
all species →		Biological Processpoly(A)-dependent snoRNA 3'-end processingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K11600RRP41, EXOSC4, SKI6; exosome complex component RRP41-Messenger RNA biogenesisko03019deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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