Gene detail

Detailed information of FUN_022690-T1 in Siderastrea siderea

Genomic Location: contig_20:11368714...11379566
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_022690-T1

ATGGGGCTTGATCCTAGTGAATCATTTAGAGAGCTTCGTCCTGTTTGTATAAAGTTATCCAAGGAACCTTCACCTCAAAATATCAAGGATCTCGAATGTAAACTACGGACTGTAAACCCCGCACATCTCAGCCAACTTGTTGAGTATGTGCTGTTTCCATTGAAACTCGCATTACAGAGCAAAAATTCTACTAATGAAGTACAAGAAAGTGTTGTCAGATGTATCGAAACTCTGTTTACATATGCTCAGGTTTGCCAGTTTGGCACATTCGAAGAGATGTTTAATTACTTGTGCATGTTGCTAAGCTCACGAGATGGTGGTCCGGGGCAGATCGCTGATATATCAGAAGAACTCAAACTCGCTATTGTCAACTGTCTTTCTTGTCTGCTCCTACACACTTCTCTTATAGTTAAAGGTGCTTTCTTTTCACCTCGCTGTCTTCCCATCATTGGACATTCAGTCAGTATTTTGCTGGCATTGTCCGAGAGAGAGAAAGCTAAAAACTTGAAATTGAGTGCCCTTGGGTGTCTCAGCAATCTTGCCTGCCTTGTTTGTGAACCCAACGTTGGTGCGAATTTAGAGTGCGATGAAGACAGGGAGGCACTGGAAAATGCAATCAAGGATTCTGTGGCAATAACTTTTGCCTCATTTATCCCAGGAATTTCAATAGCTTTATGCAGAGTTATCACATTCGATACTAAGCAGGGTTATGCTGTTATCACACAAGCCATTGATCTATGGGGTGACATTCTTTCTTTGGTTATGAATGACAAACATATGCCGAATAAACCATCGGAGAGTAAAGATGTCATTTCACAATTAATTTCATTAGCAATGGAAGGTCAATCTACAAAAgcacaagaaaacaaagaagcTGGTATTTCAAACTCAAATCCAGAAAAACATAATAAACTTCAGAGCTTGAAAGTCAACAGAACTGCTGACTGGTTTTGTGACACTGcatcaaaattaaaaattgtgaTGGAGAGACTGAGTATGATTTCTGCAAACCCTAACTGGAAAGTACGACTTTCACTGGCGAAGTTTTGTGAGAAACTGCTTACAAACTGTCTGGACTCATTACAGCCTTGTGCTTCTACCATGGTGGATTTACTGGTTGGTTTGACTGAGGATGACTATTCACAAGTTTCAGCACTAAGCAGAAGTGTGTTACAGAAGTTATCAGGATTACTTGGAGATGGACCTAGTTCACTGAACTCTCTGTTGGAGGAGAACCTTCATTCAGCCCTGACATCACTTCCACGACTGATGAGAACAGCAGAAGACGTCAAGAAAATTCAAAGTCTAAATCTTGTTCTTGGTTATTTGGGTCTTCTTGGAAGCAGAGTGAGCAGCTTGCTGAATTCATCATCACATTTGAAGAGACTCTCTCTTGCCCTGGTGCAGGTTCTTGAGTTTGATGTTGGTGATGTGGGAATTGTAGAGGAAAGGACTCCATCTCTGTCAGAAACGGCAGTTCCACCTTCTGAAACTAAAGGAGAAAATCCTATGTCCTATCCTGCAAGCCAGTTCACTGTCAGCAGGTATCCAAAATACCACTTCAAACATTTCACAGAtgtgaaagttaaggtggctgtCAACCAAATATGTCACACACTTGGTTATTATGGAAACCTTCCTCTCTTGACTGATCACTTCCTTGACTTGTTTCACGAATCCAAGCTTTACCAGAAGCAAGCTGTTTATATTTTGACTGAGATTGTGATGGGTGCTTCCAGAGGAAACCTTGACAGGGAAAATGATCTCTCGAATGGTACTGAAAACACTCACAGCACAGTTGGAACAGGAAGTGGAAAAGTCCAGGAAGTACAGAACACTGTAGAACTTTTGATCACAGAATACATTTCTGACGCTAATTGGAACCTTGTGACCTCAAATCCTCCAGTGCTACACAAACCCATCTCACCGTCAGACCCACAAGATTTCCTGTCAGGAAGGAAAGAAACCAAACAAGTCAAATCACTTCCTTTTGAAGTTCTGAACAGCAACATTCAGCTCAGCTGTTTGTTGCTAGAAGCAATTGGAGTGTTTTCCAAGGTGAGCATGTCGCAGTTTGAACAACACCTGATGCAAGTTCTGTACCCCATCATGGCAAAACTCGGCAACGACAATGCTGCTGTGAGCTGCTCAGCTTACGAGACTCTGGTTATGATTTGTCAAAGCTGTGGTTACGAGTCAGTGGACGAGCTCATTGCAAGAAATGCCGACTATCTGGTGAATTCAATATCACTGGATTTCAAGTATGTGTTCATGAACTGCCAAGCACCCTCCGTGTTGAGAGTTATGATTCAATACAGTAACCCTGGGATTCTATCCATTATCGAGGACACACTTATGGATATATTTTCTGTGATTGATTTGTATCCTGATGAACTGATGTACATGTTAATGAAAGTACTGAATGTGTTGGTTGTCATGATTAGAAAGTGGTTTCCAGCTGCAGCAATGGAAGAGACAAAAGCAGAGGCCAAAGATGAGGGTCCAATCGTTGTCAGTCAAGACGAAAAGCAATCTGAACAAGACAGGGAGGAGACAAACCTTTCAGCAGAAGAAATTCGTCAGTTTTTCCTGGATTATCACAAACGGAAGCAACAATCGTTGGGATATCTGGAGGCTGCTGAGCCTGGGGAGGTCACAGCAGAGCctgatgggggtggggaggaggAAACATTTGAGCCAGACAAGAAGCCTGAAATTCCTAGACATGTGAAATATGTAACACAGGTGCTCGAAAAATGTGTTCATTTCCTATCATCTAAGTCTCCATGGTTACGTCTTTTAGTACTGGACACAATTGAGACTGGTGTCCAAGCTATCCACCAATCCGAGGATCGGCTTCTTCCTATGATTCATCGTATGTGGCCACCAATGGTTAAAAGATTTAGAGATGATGAACAAGTGGTGACAATCAAAGCTGTGAACGTACTGTGCACAATGGCTGAAGCATCAGGCAGCTTCATGCAGCGTCGAGTCATTAAAGATGCCATTCCTCCTATGACCCAGTTCCTGGATAAACGGGCTTCTGTGAGCCTCAAGGCAGGCCCAGTCTACTCACAGTCTCAGGCATTCAAGCTACAGCTGGCTATGTTGAGGAGCTTGGGTTGCCTGTGCAGACAGCTGGACATCAGTGAAGCAAATCTTAGTTCTGTGGTGTGGGTTTGTAGCCAGTACCTCAGCTGTCGGCAACCGAAAGAACTGCAACAGATGGCTGTTACTGCATTTAAAGACTTTGCATCTGTTGAGCCAGATCTGATCTGGCTGAGTTTGAATGACCTGTACTGTCCTGAAGGACTTACTCCTCCACACGAAACATTTAAACCCATCAAGCTGGCAGGAACTGACTCTCAGAGCAAGGAGTATGCTGAGAATGTCACCATTCTGCTGTCTACAATGTGA

Transcript

FUN_022690-T1

GCCCAGTCTCCCTCTCAGAACAAGATGGCGGCGGAATCGCACATGCTGAGGAAAAAGCAGACAGACGACAGACATGGGGCTTGATCCTAGTGAATCATTTAGAGAGCTTCGTCCTGTTTGTATAAAGTTATCCAAGGAACCTTCACCTCAAAATATCAAGGATCTCGAATGTAAACTACGGACTGTAAACCCCGCACATCTCAGCCAACTTGTTGAGTATGTGCTGTTTCCATTGAAACTCGCATTACAGAGCAAAAATTCTACTAATGAAGTACAAGAAAGTGTTGTCAGATGTATCGAAACTCTGTTTACATATGCTCAGGTTTGCCAGTTTGGCACATTCGAAGAGATGTTTAATTACTTGTGCATGTTGCTAAGCTCACGAGATGGTGGTCCGGGGCAGATCGCTGATATATCAGAAGAACTCAAACTCGCTATTGTCAACTGTCTTTCTTGTCTGCTCCTACACACTTCTCTTATAGTTAAAGGTGCTTTCTTTTCACCTCGCTGTCTTCCCATCATTGGACATTCAGTCAGTATTTTGCTGGCATTGTCCGAGAGAGAGAAAGCTAAAAACTTGAAATTGAGTGCCCTTGGGTGTCTCAGCAATCTTGCCTGCCTTGTTTGTGAACCCAACGTTGGTGCGAATTTAGAGTGCGATGAAGACAGGGAGGCACTGGAAAATGCAATCAAGGATTCTGTGGCAATAACTTTTGCCTCATTTATCCCAGGAATTTCAATAGCTTTATGCAGAGTTATCACATTCGATACTAAGCAGGGTTATGCTGTTATCACACAAGCCATTGATCTATGGGGTGACATTCTTTCTTTGGTTATGAATGACAAACATATGCCGAATAAACCATCGGAGAGTAAAGATGTCATTTCACAATTAATTTCATTAGCAATGGAAGGTCAATCTACAAAAgcacaagaaaacaaagaagcTGGTATTTCAAACTCAAATCCAGAAAAACATAATAAACTTCAGAGCTTGAAAGTCAACAGAACTGCTGACTGGTTTTGTGACACTGcatcaaaattaaaaattgtgaTGGAGAGACTGAGTATGATTTCTGCAAACCCTAACTGGAAAGTACGACTTTCACTGGCGAAGTTTTGTGAGAAACTGCTTACAAACTGTCTGGACTCATTACAGCCTTGTGCTTCTACCATGGTGGATTTACTGGTTGGTTTGACTGAGGATGACTATTCACAAGTTTCAGCACTAAGCAGAAGTGTGTTACAGAAGTTATCAGGATTACTTGGAGATGGACCTAGTTCACTGAACTCTCTGTTGGAGGAGAACCTTCATTCAGCCCTGACATCACTTCCACGACTGATGAGAACAGCAGAAGACGTCAAGAAAATTCAAAGTCTAAATCTTGTTCTTGGTTATTTGGGTCTTCTTGGAAGCAGAGTGAGCAGCTTGCTGAATTCATCATCACATTTGAAGAGACTCTCTCTTGCCCTGGTGCAGGTTCTTGAGTTTGATGTTGGTGATGTGGGAATTGTAGAGGAAAGGACTCCATCTCTGTCAGAAACGGCAGTTCCACCTTCTGAAACTAAAGGAGAAAATCCTATGTCCTATCCTGCAAGCCAGTTCACTGTCAGCAGGTATCCAAAATACCACTTCAAACATTTCACAGAtgtgaaagttaaggtggctgtCAACCAAATATGTCACACACTTGGTTATTATGGAAACCTTCCTCTCTTGACTGATCACTTCCTTGACTTGTTTCACGAATCCAAGCTTTACCAGAAGCAAGCTGTTTATATTTTGACTGAGATTGTGATGGGTGCTTCCAGAGGAAACCTTGACAGGGAAAATGATCTCTCGAATGGTACTGAAAACACTCACAGCACAGTTGGAACAGGAAGTGGAAAAGTCCAGGAAGTACAGAACACTGTAGAACTTTTGATCACAGAATACATTTCTGACGCTAATTGGAACCTTGTGACCTCAAATCCTCCAGTGCTACACAAACCCATCTCACCGTCAGACCCACAAGATTTCCTGTCAGGAAGGAAAGAAACCAAACAAGTCAAATCACTTCCTTTTGAAGTTCTGAACAGCAACATTCAGCTCAGCTGTTTGTTGCTAGAAGCAATTGGAGTGTTTTCCAAGGTGAGCATGTCGCAGTTTGAACAACACCTGATGCAAGTTCTGTACCCCATCATGGCAAAACTCGGCAACGACAATGCTGCTGTGAGCTGCTCAGCTTACGAGACTCTGGTTATGATTTGTCAAAGCTGTGGTTACGAGTCAGTGGACGAGCTCATTGCAAGAAATGCCGACTATCTGGTGAATTCAATATCACTGGATTTCAAGTATGTGTTCATGAACTGCCAAGCACCCTCCGTGTTGAGAGTTATGATTCAATACAGTAACCCTGGGATTCTATCCATTATCGAGGACACACTTATGGATATATTTTCTGTGATTGATTTGTATCCTGATGAACTGATGTACATGTTAATGAAAGTACTGAATGTGTTGGTTGTCATGATTAGAAAGTGGTTTCCAGCTGCAGCAATGGAAGAGACAAAAGCAGAGGCCAAAGATGAGGGTCCAATCGTTGTCAGTCAAGACGAAAAGCAATCTGAACAAGACAGGGAGGAGACAAACCTTTCAGCAGAAGAAATTCGTCAGTTTTTCCTGGATTATCACAAACGGAAGCAACAATCGTTGGGATATCTGGAGGCTGCTGAGCCTGGGGAGGTCACAGCAGAGCctgatgggggtggggaggaggAAACATTTGAGCCAGACAAGAAGCCTGAAATTCCTAGACATGTGAAATATGTAACACAGGTGCTCGAAAAATGTGTTCATTTCCTATCATCTAAGTCTCCATGGTTACGTCTTTTAGTACTGGACACAATTGAGACTGGTGTCCAAGCTATCCACCAATCCGAGGATCGGCTTCTTCCTATGATTCATCGTATGTGGCCACCAATGGTTAAAAGATTTAGAGATGATGAACAAGTGGTGACAATCAAAGCTGTGAACGTACTGTGCACAATGGCTGAAGCATCAGGCAGCTTCATGCAGCGTCGAGTCATTAAAGATGCCATTCCTCCTATGACCCAGTTCCTGGATAAACGGGCTTCTGTGAGCCTCAAGGCAGGCCCAGTCTACTCACAGTCTCAGGCATTCAAGCTACAGCTGGCTATGTTGAGGAGCTTGGGTTGCCTGTGCAGACAGCTGGACATCAGTGAAGCAAATCTTAGTTCTGTGGTGTGGGTTTGTAGCCAGTACCTCAGCTGTCGGCAACCGAAAGAACTGCAACAGATGGCTGTTACTGCATTTAAAGACTTTGCATCTGTTGAGCCAGATCTGATCTGGCTGAGTTTGAATGACCTGTACTGTCCTGAAGGACTTACTCCTCCACACGAAACATTTAAACCCATCAAGCTGGCAGGAACTGACTCTCAGAGCAAGGAGTATGCTGAGAATGTCACCATTCTGCTGTCTACAATGTGAGAGCAGGACTTGAAAATCGAACTACGTCCTCAAGATCTATCCTGCGCAATGTCACGCAAAGACAAACGAACCCCGAAGCCGCGAAGAAAATGGGGGAGAAGGAGTTTCGTCGCTTTGCTTATCGCTAGCCAGCTATGCAAGCGTCGCCGTTATATTTTCGAATCAAAGAGAGAGCTAGATGGTTTAAGGGTGTCAAAAATGTACGAACGTGAGCCACCGAAAGTGCAGTTGCGAAAGACATGTCCATAAATCATTAACGATTTCGCTTTCACAGTAACGTTTGCCGTTTCCTAAAGAACGTTGAGGAGAATGTGAGTAAACTAAACTCGATTGTGTGAAATGCATAAGCTCTTTTAATGTTTACAAACGTTGTGTTGATTGTTAACGTGGTTTTGTGATGCTTTTTATGTCAAGCGTGACCTTGAATCATGAACATCACCGTTAAATAAAGTTTCTAATAGACCAGGAGGAACGTCCTTACACCCtagtgtttttctttctttctttctttctttctctctctctctctctccagaagaaaagtcaggcacttttgtaacttttgtctctcttgataatagctatgcttagatctttgcagaaaaaactaaataaaatcatggaaatacttactgctgtaaacccactgcatgcaagtagtcagttaataccacacaaatctgcatgtattaggctctgatgtgtcctcg

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21547 all species →	TTI1	TELO2-interacting protein 1	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR049362 all species →	Repeat	TELO2-interacting protein 1, middle region repeats	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR052587 all species →	Family	TELO2-interacting protein 1 homolog	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18460 all species →	TEL2 INTERACTING PROTEIN 1 TTI1 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006338 all species →	Biological Process	chromatin remodeling	Interproscan
GO:0070209 all species →	Cellular Component	obsolete ASTRA complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20403	TTI1; TELO2-interacting protein 1	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.