Detailed information of FUN_022759-T1 in Siderastrea siderea

Genomic Location: contig_21:638879...645199
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04089
all species →		BRICHOSBRICHOS domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR007084
all species →		DomainBRICHOS domainInterproscan
IPR001729
all species →		FamilyPulmonary surfactant-associated protein CInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10800
all species →		PULMONARY SURFACTANT-ASSOCIATED PROTEIN CInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005576
all species →		Cellular Componentextracellular regionInterproscan
GO:0007585
all species →		Biological Processrespiratory gaseous exchange by respiratory systemInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_022759-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_022759-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
3TPM > 0
7Conditions
35.1Max TPM
0.5Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 1 1.76 35.14
holobiont · control.pH_high.temp 20 1 0.54 10.72
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 0 0.00 0.00
unannotated 1 0 0.00 0.00
live coral tissue/skeleton 1 1 0.09 0.09

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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