Gene detail

Detailed information of FUN_022778-T1 in Acropora pulchra

Genomic Location: ptg000016l:12879228...12893692
NR annotation: XP_015776992.1, PREDICTED: uncharacterized protein LOC107355000 [Acropora digitifera]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_022778-T1

GAAGGTACGACTTTTGGAAGGTATGACTGTTATCCTTTTGTTTTCTGTGTACGAGTTTGGCCAATATCGTGAAAACATTTTAGATATGAGACCTAGTGGCCAGCCAAACTCGTTGACCTTGTTGAAGATCCATACTTTCACGGAATGTGTTCGGACGGAGATGTTTTGCGATCGGAAATAGACCGGCGGGAGTTTCAACTTACAAATTGACGTTGTTTAGTACTTGAAGAAATTGAAGGATGGACGTGAAAGTTCCTCCTTCAAAAAAAACTAGACGGAGACCCCGCTATCTGCAGGCACTGAGAGATTTTACAGCCGCCGATGCTTGTTTTTCTGATGGCGCAAATCCTCTTTCCTTTCACATAGGTGAAATCTTCGCATTTTTGAGTCGCAGAGACAATTACTGGGTTAATGTCGAACGGACAATCTGGAAACACAATCTCCTTCTTAAGTCGAAAGATCACCCTGCTGTTGAGCGGGGAATCGTACCTGTGGACTACGTAATCGAAATGGATATCAGTACCGAACAGAGTGAAATAATTACTTCGGCGAAATCTGAGGATGATCTCGTGCTTTGTGATGTCGAAAAACATGACTCATTTAAGAGGGACACAGATGGACTGGCAGATGAACTGAAACAAGTAAAGAGAAAGCTTGATGATGCATACAAAGAAAATGCTCTCCTTCATGAGAGGTCAACTCAAGAGTACAAGCAAAATTTACAGCTTGTTCATCAGCTTTTATCACAGTATTATGCTGTTGGAGAAGCGGTTGTTACTGCGAAGGAAGAACTGGCAATTGCACAACAGTCACTAATAGAGGAACAAGAAAGAAGTCAAATGTATCAGAAGAAGTTGGAAGACATCAAGACTCAGATTAATAAATCTGGCGTTAAATCTGCTATAAAACTTTTAGATAAGATTCTTCAGAAAGATACAAAGTCACAGCAAAATGGTTTAATACAAAAGGGTAAATCTGATACCTCCTGTGATGATTTAATGCTGTCATGTGCACTGTGTCATGAAAAAATGAGGGTTGCTGACCTTGCTTCCCATTCCAAAGTTTGTTGCCCAAAAGACACAAGCAAACATCCAACAACGCCATCAACACCAAGCCCAGAACTTCTTCGTGTGACTGTGACATCCTCAGAAACTGATGAGAAAAATGCAACCTTTAAAGTTGTTACAAAGACAACTTCAGAACAGTACAAGTTCTCTGACTATGAAGTTCATCGCAGTGAGGGTGACTTTGAATGGCTTCAATCAACATTAGAGGAGTCTTGTCCTGAGAGAATAATACCACCATTAGTCCTGCATTCTTCATTGCATGGGAAAATGAGAGAGGTTCAAAGATTTTTATCAAGGATTTGTGCTCATAAAGTTTTGAAAAAGCACTATCTTCTCAACTTATTTTTAACTGGCGAGGGACAGGATTTGCAAAAAGCTCGAGATGAACTTGAAATGAAAAAACAGAAAGATAAATCTGCAGTGGATGAATACATGAGTCAAGAATGTTGTGATCAGAATGCTCCAGTTATAAAGTGTCAGAGATACTTAGAACAGTTTGCGGCAAATCTTGATGGCCTAATAACTTATCTTCAAGAAAGTTTGAACAAGTGCATGATCGATGGCCCTGGTGTATGGTTTAAATCACTGTCAGACTGTGAACCATCTGATACATACTTGAAGACTGCTGCTGAAGCTCTTAGTAAAATTTGCATGGAGTTGGAGAATAACCGTGAAACAGCAGAAGAGAAGCTTATTGTGAATGATTTGAAGAGTGTGTATCACTATGTTAAAAGTGGTGAGGGGCTTCTCCAGCGAGTACAAGCTGCAGTGGCCAGGTTTGTACACTGGGAAGAGGAAGTCAGAGCCTACGAAGAAATGAAGGAGCCGTCTTTGGAGAATGAATCAGACGCAAGCAATCAAACACAAAAGTGGGCAGAGGCGAATTCCAACTGTGCTGAAGCAAAAACAAAGTTGGAACATTTGTGTAAAGAATTGTCGTCAGAGTTGGCACATTTTGATTGGAGAAAAGAAGTGGAGTTGCGTGAAATATTGATTGAATACTCAGCACTAAAATCAGAGCATTTCGAAAAGGTTCAAAGTAAATGGTTTGGAGTGAAACTGATGGTGGAGGCACCAGTAGCAGCTGAGGCCCGAGCTATCAAGTGTGTGGAGGATACATAGTCACTTATGTCAACATCTTCATTATTCCTGACATCAGCTCTTTTGAGTTAAAAAGAGTCTGTTGCTATCTGAAAGTTCAAAATATTATGTATGACAAACAATATTAGTTGGCACGCAAGGAAAAGAGATTAACAGAGTCTATTGCAACCAAACGTACAAGCAAGATTATTATTATTATCATTGTAACTATTATTGTTATTATGTTTAGGACAAGAAATAAGGAGCCTATGGCAAAATTAGTTTTTCAGTAGCACATAAATATTTAAAAAACCTTGATAGCTAAAATCATTGCAAAAGGCAGGTTGAATCAGATCCATTTTTTTGCCCCACCCTGAATCACCACAATAAAATGGGGTTATTTGGTGGACACCAATAAAAGAAGGACCATCTGTCATTGTTTGCATTCATGTTCATTATCTGCAG

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002406 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00787 all species →	PX	PX domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027267 all species →	Homologous_superfamily	AH/BAR domain superfamily	Interproscan
IPR001683 all species →	Domain	Phox homology	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR036871 all species →	Homologous_superfamily	PX domain superfamily	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45949 all species →	SORTING NEXIN-4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000407 all species →	Cellular Component	phagophore assembly site	Interproscan
GO:0000422 all species →	Biological Process	autophagy of mitochondrion	Interproscan
GO:0005769 all species →	Cellular Component	early endosome	Interproscan
GO:0015031 all species →	Biological Process	protein transport	Interproscan
GO:0032456 all species →	Biological Process	endocytic recycling	Interproscan
GO:0034727 all species →	Biological Process	piecemeal microautophagy of the nucleus	Interproscan
GO:0061709 all species →	Biological Process	reticulophagy	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_022778-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.