Gene detail

Detailed information of FUN_022809-T1 in Colpophyllia natans

Genomic Location: contig_44:478171...481082
NR annotation: XP_020612424.1, uncharacterized protein LOC110050800 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

FUN_022809-T1

ATGTCCAACAGCATGTATAGGCAGTTACTTGTTTCTAAGTCTTTGTATCAGGTAACTTGGGGCAAAAGAGGAAACACGATGCTACTGCTCTCTGAAGCCTCTGAAATGATGGGCATTGAAGCGACATGTGCTTCCGTCTATATTGATGACAAAGGAAAACGTTTGTGCTATAGCGGTATCTATCTGCTTGTTGACGGCCAAACAGAGGCTGGAGTTCAATCCTTGAAAGAGGCTGTTTCCTTGATGAATGACACCCCCGAACAAAGCATTCTTAAAATTATTGCTTTTCAGATGCTTGCTTCATATCATCGTTACAAAAATAACACCTGTGCAATGTCAGAGTTCGTCAGTAAATCATTTCAGGAATGCCAATCACCTGGAACAAAGCAACTTTATTCTCTCTTTATTCCTGCAATGGAAAGCACaggaaagaaaattgaagaaaagGGAATGACACAACAGCCGCTAAGATTAGAAATTATTTCTCTTTTGAGTGATTCAGGAAAACATTTAATAGACACTGAAACAAAGCAATGCATGATCGACGCAGCCCAAGAAATAACAAATGGCATTGAAAAATCCCCAGTCCAAAGATCACTTGGTTCATTTATTTTCCAGTGCAATGCCCATATCGTATTGCGGCACCTTATGACAAAAGATAAAGGCGCAGATAAAATACCCAACGAAAGAATTATTGGCTGTCATGAGACGGAAATCAATGAATCCAAGAGAGCTAAGACAGCTCCGGCTGCAGAAACACACTCTACAGACAACCTATTGAGGTCAcggataaaacaattatttcaggCTCCATCACATTTCGGAAGACCTGCTGCACTCAATATCAGGCTTAAATTATTTGGAGTAAACCACCCAAGCACAGCTAGCAGTTACCATTCACTCGGTGCCACACAACTTGCACAGGGTGACTTTTCCTCAGCTCTTCAGTCTACACAGCGTGCActtgatatcaggcttaaactattTGGAGAACAACACTCAAGCACAGCTAATAGTTACCATTCCCTCGGGATCAGGCAACATGAACAAGGCGACTTTACCTCAGCCCTTCAGTCAAAGCAGCGTGCTCTTGATATCAAGCTTAAGCTATTTGGAGACGACCACGCAAGCACAGCTGACAGTTACCAGTCATTCGGGATCACGCAGTATGCACAAGGCAACTTTTTCCCAGCTCTTCAGTTTACACAGCGTGCTCTTGATATCAAGCTTAAACTATTTGGAGAGCAACGCTCAAGCACAGCTAGCAGTTACCATTCCCTAGGAGCCACACAACATGCAAAAGGCGACTTTTCTTCAGCGATTCAGTCTACAAATTATGCTattgatatcaggcttaaactcTTTGGAGAACAACACTCAAGCACAGCTAACAGTTACCATTCACTTGGCCCCACACAACATGCACAAGGCAACTTTTCCTCAGCTCTTCAGTCTAAGCAGCGTGCTcttgatatcaggcttaaatTATTAggagaagaacactcaagcacagctGACAGTTACCATTCACTGGGAACCACAGAACATGCACAAGGCGACTTTTCCTCAGCTCTGCAGTCTAAACAGAGTGCTCTtaatatcaggcttaaactattTGGAAAACTACATTCAAGCACAGCTGAGAGTTACCATTCACTCGGAACCACACAACATGCACAAGGTAACTTTTCTTCAGCTCTTCAGTCCAAACAGAGTGCTCTTGATATCAAGCTTAAACTATTTGGAGAACAACGCTCAAGCACAGCTGGCAGCTACCATTCACTCGGAATAACACAACATGCACAAGGCGACTTTTACACAGCTCTTAAGTCTAAACAACGTGCGCTTGATATCAGACGTAAATtgtttggagaagaacactTAAGCACAGCTAGCAGCTACCATTCACTTGGGCTCACACAACTTGAACAAGGCGACTTTTCCGTTGTTCTTCAATCCGCGTATCGTGCACTTGATATGAGGCGTGTCCTACTTGGAGAACAACACTCAGGCACCGTTGACAGTTACCATTCACTCGGAACCACACAACATTTAGAAGGGGATTTTTCCTCGGCTCTTCAGTCTAAACAGCGTGCActtgatatcaggcttaaactattACCAGAACAACACTCACGCACAGCTGACAGTTACCATTCACTCGGAGCCACACAACATGCAAAAGGCGACTTTTCCTCAGCTCTTCAGTCTAAACAGCGTGCTCTGGACATCAGGCTTAAACTATTTGGAGAACAACACACAAGCACAGCTGAAAGTTACCATTCACTCGGAACCACACAACATGCACAAGGCGACTTTTCCTCAGCTCTTCAGTCTAAACAACGTGCTCTGGACATCAGGCTTAAACTATTTGGAGAACAACACTCAAGCACCGCTGACAGTTACCACTCACTCGGAACCACACAACATTTAGAAGGGGATTTTTCCTCGACTCTTCAGTCTAAACAGCGTGCActtgatatcaggcttaaactattACCAGAACAACACTCGCGCACAGCTGACAGTTACCATTCACTCGGAGCCACACAACATGCACAAGGTAACTTTTCCTCAGCTCTTCAGTTTAAACAGCGTGCTcttgatatcaggcttaaactattTGGAGAACAGCACTCAAGCACAGCTGACAGTTACCATTCACCCGCACCCACATAA

Transcript

FUN_022809-T1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR051787	Family	Effector and Ciliary Development-Associated Protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45641	TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K04907	KCNH4, KV12.3; potassium voltage-gated channel Eag-related subfamily H member 4	-	Ion channels	ko04040	deepkoala