Detailed information of FUN_022833-T1 in Siderastrea siderea

Genomic Location: contig_21:1805608...1833013
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF09380
all species →		FERM_CFERM C-terminal PH-like domainDomainInterproscan
PF09379
all species →		FERM_NFERM N-terminal domain DomainInterproscan
PF00373
all species →		FERM_MFERM central domainDomainInterproscan
PF11819
all species →		CUPIDCytohesin Ubiquitin Protein Inducing DomainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR019749
all species →		DomainBand 4.1 domainInterproscan
IPR018980
all species →		DomainFERM, C-terminal PH-like domainInterproscan
IPR000299
all species →		DomainFERM domainInterproscan
IPR019747
all species →		Conserved_siteFERM conserved siteInterproscan
IPR014352
all species →		Homologous_superfamilyFERM/acyl-CoA-binding protein superfamilyInterproscan
IPR018979
all species →		DomainFERM, N-terminalInterproscan
IPR019748
all species →		DomainFERM central domainInterproscan
IPR011993
all species →		Homologous_superfamilyPH-like domain superfamilyInterproscan
IPR021774
all species →		DomainCytohesin Ubiquitin Protein Inducing DomainInterproscan
IPR035963
all species →		Homologous_superfamilyFERM superfamily, second domainInterproscan
IPR029071
all species →		Homologous_superfamilyUbiquitin-like domain superfamilyInterproscan
IPR047176
all species →		FamilyFERM domain-containing protein 4A/BInterproscan
IPR041785
all species →		DomainFRMD4A/B, FERM domain C-lobeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46079
all species →		FERM DOMAIN-CONTAINING PROTEIN 4Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005856
all species →		Cellular ComponentcytoskeletonInterproscan
GO:0090162
all species →		Biological Processestablishment of epithelial cell polarityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K23970FRMD4; FERM domain-containing protein 4-Domain-containing proteins not elsewhere classifiedko04990deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_022833-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
8TPM > 0
7Conditions
42.0Max TPM
2.2Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 1 0.50 10.10
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 1 0.20 3.83
Whole organism 4 4 32.25 42.01
unannotated 1 1 17.56 17.56
live coral tissue/skeleton 1 1 28.32 28.32

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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