Gene detail

Detailed information of FUN_022865-T1 in Acropora pulchra

Genomic Location: ptg000017l:820757...827901
NR annotation: XP_029198020.2, LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase KCMF1-like [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_022865-T1

CCAGTGAAACCGGTCGACAAGTCATTTCTGCCTTCCTTTGGTGGAAATGCAGCAGAAGTTTGCCTAAGCTTGTGTTGTTTTCGCGTTCTTAACTATTGTATTAAGAAAACACAAAATAGCTGTCCAATGTTCTTTGCTGCTGGGGAAAAATTGTGCGTTTTCAGGCCGTTATCTCTGCGCAAATTTGACTCAACAGACGGAACATATCAGACAAGTTGCTATGTCTCGACATGAGGGTGTTAGTTGTGACTCATGCAGCAAAGGGAATTTCCGTGGTAAACGCTTCAAATGTTTAATATGTTATGACTATGACCTGTGTGCGACATGTTATGAAAATGGTGCAACAACAACAAGACATACAGCAGATCATCCCATGCAGTGTATCCTAACAAGAACTGACTTTGAACTCTATTATGGAGGTGAAGCATTTACAGCAGATCAACCTCAGTCATTTACATGTCCTTATTGTGGGAAAATGGGTTTCACAGAATCAGCACTGCAAGAACATGTGGCATCAGAACACAGTGATTCTTCGATTGAAGTGGTGTGCCCAGTTTGTGCAGCCTTACCGGGTGGAGACCCTAACCACGTGACAGATGACTTTGCAGCCCACTTGACATTAGAGCACAGGGCACCCAGTAGAGATATTTTAGACGAGCCAGGGGCTGCTCGGCACGTCAGACGTTTATTTCATCCAGCAGTTAGTGGAAGTCGCCCTAGACCTCCACGATCACGAGCAACAAATATGCATTTTGGAGGATCTGGGGGTGGTGGTGGACTTTCTTCGTCGTCATCCTCCTCGTCCACGGCTGTCCGCGAGAGCATGGATCCAATAGCTGAGCTCTTGTCGCAGCTGTCTGGTGTTCGACGAGCCGCGCAACAGTCGCAGCCTCCAATGCAGTCCCAGCTTCAGCTGCTGCAGCAGCAGTTGCAATTAGAGAGACAGCAAGTGCAACAGACTAGGGAGCGACTAGAAAGGCTACCAGCTCGGCGACAGATGGCTGCTGCAGCAGCCGCCGCGGCAGCCAGTAGTAACGCACCAACGACATCGACAGTCAGCAGCCAAGAAAGCAATAGCTCGGCTCCTTCGTCTTTTCTTCTTGCCAGGGCTAATGAACCATCTTTATCAGAAGCCGAGCAAGAAATGCTTGAACGCGAGCGTGCGGACAGAAGTCTGTTTGTTCAGGATCTCATTCTGTCAACTCTAGGATCAGCAGCGTTCAGGCGGAGACCCCACCCATTGTCTTCGTCTGCGGCAGAGCCTATGGACGAATTTGCAAGGTTATCCCTACAAGAAAGTAGCGACATTCGGGAAAGCAGCGAGGGGGCTTCGGCTGCACAGGACTGTAACATTATAGAACAAGATATTACTGTTCAAGATATGGAGCATATATCAGTTGATACAGAAGAAGAGGACAAAGATTCCTAGCGGTGTACGGTGTATGATTGAAAGAATCAAATTTTATCTTGTGTAGTAACAACACAAATGGATTTTGAGTGACGTAACGTCACAGTTCTGTTGCCGTCGTTTTAGACCGTTATGAAGTTGCGCGCACCCAACCAAGCCGCACGGAAAATGATATCGAGGCCAAGTAGGTCTTTTAAAGAACACAGCAACCGCATTACTTTTGCGCTGAATGTCGCGTTGTCTCTGGAAATATTTAGTGCTGACAGAAAATCGTGTCTAAAAAGTAACAGTGATCGCGCGTTTCTTGTAGTTGGAAAAAAAAATAGGTAGGGTGGAAAATAAATTTTAATGAACAGCAGCAAAAGAATTTGGATGCTTTTAAGTTGAAAAAAATTGAGGGCCTGTTAAGGTGGCTCCTTCTTGTTAGACATGCAACAAGAGTCTTTCACTGTGGCCTGCCATGGTCCATAGAGGTCCGTCCTTTTCTAACTTACTGGCGGAGATGTCTGCGCACACAGTAATTTTATGAACCGTCAAAATGAAGCCAAAAGCCATTTTGCCTGGTCTTTGAAAGCGTTGCAGGGCAAGCTATCGGTTATCTTATTGTCCAGATATCCATTTTTTCCAATTTCTTTACAAGATCATCTAGATTCGTTTCAGCCTTAAGAATTTCGAGAAGCGACGTTTCGAGTCGTTCGTCCACAAGACTCAAACCACCTCGCGTTTTGAGAAGGATAAAGAGCTCGGTGAAATCGTCGTTTACTCGATCGACGTGCTTGTCGCGAGATACCATATGCGTGTGCGTGCCGACGGTACGATCATATCGTCGAAATGGATTCATGCTGTCCAAGGGTATAATGTTTGTTTTCGTTTTGGGGTTTATTCCGCTTTATATTCTCTACAACTCCCCTTCGGTTCATAGTTTCATTGGTCTCTCTTTTTTTTTCCAGTTGACAGGGCCAATCTTATAAATAATTCGAAGTTACATTAATATTTCATGACCTAACAGCCTGTCAAAACACCGATGAAACGTCATGTGCATGAGTTTCATGAGAAGACACTCATCGTTAATATTCTATTTCTGAAGAATACTGATAGGCATTGCTTGTTTTCCTTGTATGTTAATATCTTCGCTCGCAGTTTGAACTTTTGCTCGGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q80UY2	E3 ubiquitin-protein ligase KCMF1 OS=Mus musculus OX=10090 GN=Kcmf1 PE=1 SV=1
Q7T321	E3 ubiquitin-protein ligase KCMF1 OS=Danio rerio OX=7955 GN=kcmf1 PE=2 SV=1
Q1LZE1	E3 ubiquitin-protein ligase KCMF1 OS=Bos taurus OX=9913 GN=KCMF1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005209 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00569 all species →	ZZ	Zinc finger, ZZ type	Domain	Interproscan
PF05605 all species →	zf-Di19	Drought induced 19 protein (Di19), zinc-binding	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR000433 all species →	Domain	Zinc finger, ZZ-type	Interproscan
IPR050774 all species →	Family	KCMF1 and Dystrophin	Interproscan
IPR008598 all species →	Domain	Drought induced 19 protein type, zinc-binding domain	Interproscan
IPR043145 all species →	Homologous_superfamily	Zinc finger, ZZ-type superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12268 all species →	E3 UBIQUITIN-PROTEIN LIGASE KCMF1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0099536 all species →	Biological Process	synaptic signaling	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22376	KCMF1, FIGC; E3 ubiquitin-protein ligase KCMF1	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.