Gene detail

Detailed information of FUN_022883-T1 in Acropora pulchra

Genomic Location: ptg000017l:1023724...1044631
NR annotation: XP_015770685.1, PREDICTED: extracellular calcium-sensing receptor-like [Acropora digitifera]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_022883-T1

ATGGGTAGCGCTGAAAGTTCTAACAAAACGATGTTTCAAGTTGCAAAACTCTCCATTCACGAAGAGGATAAGGACATGTTATCTGGGAGGAATAGTCCAACTCCCAGTCAAAAAAGTGACTCACAAGGGCAGCAGTCCAAGTTTGCACATTTCAAGGGAGTTGTTAATGGTATTCGTCGCAAAGGCGGAAGACGAGGATTAGAACCCAAGACGGACCTTCTGTCTTCCTCGGAGCACAACAGCAATGAATCAGGCCTTCATTTTGGAGTAAGAGTTGAGGGAATTGATGAGCTGATATCTAACACCAAATTTTCAAGGCAGGAATTGCAGAGAATGTATAGGGGTTTTAAAAATGAATGTCCAAATGGAACAGTGGACAAAGACACCTTTAAAAAAATTTATGCCCAGTTTTTCCCTTATGGAGATTCAAGTTTATATGCTATCCATGTATTCAACGTGTTTGACCAAGACAGAGATGGAAAAGTTTCCTTTGAGGACTTTGTAACCGGGCTGTCAGTATCTCTTTACGGAAGCAGAGAAGAAAAAATCAAGTGGGCATTCCAGTTGTACGATTTGGACGGTGATGGTTGTATAACCAGAGAGGAACTTGCGACTGTGGTCCATTCGGTTCACTGCATGATGGGTTTGGATTCCCTCCAATCTGCTGGCGGGGAATTGAGTGTTGAAGAACAAGTGCAAAGACTTTTTTCGCTGATGGACAAAAACCAAGATGGCGTCATTTCCGAGGAAGAATTTTTAGAAGGCTGTGAAAAGGACGAATCAATCAAGCAAAGCCTTGCAATGTTTGACTCTGTAAATCATTCACTGCATTGTGCCGATCCAAGCAGTGCTTCAAACCTTGAGGGCGATTTAATTATCGGAGGATTTTTCCCTGTCCACATTGTGAAACCTACGGAAGGAACACAGCAATCGTATGATATCAATTTATACGGATTGAACTGGGTGGAAGCCATGTTGTTTACAATTCAGGAAATCAACCAGAATCACAATTTTCTACCACGCAACTTCACTTTGGGTTATGACATAAGGGATTCCTGTAACAGTGTCCCTGTAGCTCTCAATGCAGCGCTGGACTTTATGCTAGAAGCAGGCAGTACAAGCAGTGGAGACAACCCAATCGAGCCGGCGAATAATTTCTCTACTTTATATTGCAAATGTAAAAGCAAACAGACGTTAATATCAGCCGTCATTGGAGCGGCTTCATCCTCTATATCAGTCAGCGTGGCCAGTCTTGTTGGAGTGGACTATACGCCCCAGATTAGTTACTCATCGACTAGCGTACTCCTCAGCGACAAGACAATTTATCCTTCATTTTTCAGAACAATACCCTCCGACACGTACCAGGCACAAGCTCTTGCCGATTTATTATTGCATTTTGGATGGACATACGTGTCCATCGTAGCCTCCGACAACGCATATGGACGAGCTGGGGTCGATTCGCTCCGCACCGAACTGAAGAAGCGTAGAATTTGCATTGCCTTAGAAAAGATCTTTAATCCTTCTTTGTCGAAGGAAGAGCTTCAAACAGTTATCGAACATCTCAAGAACACTCCGAAAGCAAGGGTAATCATTTTATGGTGTGAGAGGCCGAATGCCGTTGGCTTTTTGAACGAGGCATCGCGTCAACAACTGAATGGTAAGACATGGATTGGTACAGAAACCTGGGGAGATGCTTACCAGCTTAAAAGTTTGGACGAAAATGTTGTCGGAGGAATGCTTGGAGTATTGCCTTTGTTGAAAAAGCACCTTGACTATGAAAAACACTTGAGAGAATTGAGACCAAACAGCACGGCATATAATCCCTGGATGTGGGAATATTGGGAAGGAAAGTTCGATTGCTTCATGAAAGACTCAAAGAATCAGTGGCCATCATCAATTCGTGAGATTCAAGAGAGAGATTATTACGTCTACTCGACAGAAAGACCAAATGTGACCATATTGTGCCCAAGACGACCTTCCCTCGGCCGACCAAGTGGACACTTTTTGCCTCGTAATAAGTACACAAATGTAATGGATGCTGTCTACGCGGTTGCTCATGCAGTCAAAGATATCTTTAATTGCAAGAATACTGAAAATGGCCTCCAGGGCGAAGAATGCCCTACCGTCAATGGTTCGTTTGTAAGACCGAGGGACATTTCACGATTTTTGAAAAACGTTTCATTCAAGGGAAGATCTGGGTCACAAATCATGTTTGATAAGAATGGTGATCTCCGATACGGGTCCTACGCCATCAAAAACCTACAGCGAGTAAACGACAAGGAAATGGACTTTGTGGAGATAGGTGTGTGGAATGGCATTGATGGAAAGCTTTCACTTTTGAACACTTCGCGCATCATATGGAATGGTTGGACTTCAGAAAAACCCAAGTCAATCTGCGCCGACCCTTGTGCTCCGGGATATTATTCTGTTCAGGGAAGTATTTCTTGTTGCTGGAAATGTGTGAAATGCGAGAACGGTTTTGCAAAATCAAACTTAGGTCCTGAAGTTTGCCGGAAATGCCCAGTAGGCTTTGTGTCGAACGCCCCCCGAACGCACTGTGTAGAATTAAAATCAGACTATCTGGCATGGCAAAATGGACACGGTGTAACCACAGTCGTTCTTGCGATCATCGGCTTTATTATATCACATGGCGTCCTTGTAGTTTTCTATAGGTATCGGGATACGGCCATGGTGAAGGCGTCTAATCGCGAGTTGTCATTTTTGCATCTCGGATGTATCGTTGCAATATTCGTGCTACCGTTTGTACTGATAGGAATGCCGACAGAAGCTCGTTGCACAGTTCGACCGCTATTCTTTGGAATCCCATTCACTCTCTGCACTTCGATAACGCTGCTAAAGACGGATCGACTCTTGCGCATCTTTCAAGCCAGGTCACGGCTGGCCGCTGGCAACAGCTACCTCATAAGTAATAAAATGCAAGTCATTTTGGCGAGCATGATGACGCTGGTTCCCGTTACCGTCACAACTGTATGGTTTGTTTTTCATGCACCGGAAGTTATCGCAAAAGTTGACCTGTCAAGGGAGGGCTGGCAGGTAGTCAGCTGCGGGGCATCAAACGAACTTCTCAACATTGTGATTCTAGCGTATGTGTTGATCTTGGCATTGCTATGTACTTACTTTGCGTTCAGAGCCAGGAAGCTCCCTGAAAATTTCAACGAAGCTAAGTACATCTGCTTTGCAATGTTCGCGTTCTGTGTTTTTTGGCTTAGTTTTTTCCCAGCGTACTACGATAGTGTTGGCTCCAAGCGTGATTTCATATTCTGTGTAGCGGTTCTTGGCTCAGGTTATGCCGTGCTATGTATAATGTACTCTCCGAAGTTGCATGTAATACTTTTTCGTCCCGAGGACAACACCACTGAAGCTTTCCGAGCAATCACATTAGTGGCTATGAAAAGGACTGGAGGGGTCGTGGTGTCTTCGAACAGCACTACACCTCCTAGGGCTACACCCGTCTCTTCTCCTCTTCCTTCCAGGCGCGAGTCACCAGCCGACGGGTTTACGGTTATTAACGGGAGATTAAGTGCAGTCAGTATTGGCCAGCGGATCTCTCCATCACCTAAATAA

Transcript

FUN_022883-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P48442	Extracellular calcium-sensing receptor OS=Rattus norvegicus OX=10116 GN=Casr PE=1 SV=1
Q9QY96	Extracellular calcium-sensing receptor OS=Mus musculus OX=10090 GN=Casr PE=1 SV=2
P41180	Extracellular calcium-sensing receptor OS=Homo sapiens OX=9606 GN=CASR PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000279 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13833 all species →	EF-hand_8	EF-hand domain pair	Domain	Interproscan
PF01094 all species →	ANF_receptor	Receptor family ligand binding region	Family	Interproscan
PF13499 all species →	EF-hand_7	EF-hand domain pair	Domain	Interproscan
PF00003 all species →	7tm_3	7 transmembrane sweet-taste receptor of 3 GCPR	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017978 all species →	Domain	GPCR family 3, C-terminal	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR000337 all species →	Family	GPCR, family 3	Interproscan
IPR038550 all species →	Homologous_superfamily	GPCR, family 3, nine cysteines domain superfamily	Interproscan
IPR009030 all species →	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR050726 all species →	Family	Metabotropic Glutamate Receptor	Interproscan
IPR001828 all species →	Domain	Receptor, ligand binding region	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR028082 all species →	Homologous_superfamily	Periplasmic binding protein-like I	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24060 all species →	METABOTROPIC GLUTAMATE RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0001640 all species →	Molecular Function	adenylate cyclase inhibiting G protein-coupled glutamate receptor activity	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007216 all species →	Biological Process	G protein-coupled glutamate receptor signaling pathway	Interproscan
GO:0051966 all species →	Biological Process	regulation of synaptic transmission, glutamatergic	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_022883-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.