Detailed information of FUN_022914-T1 in Siderastrea siderea

Genomic Location: contig_21:3022814...3029169
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000083 (this species only) · gene tree & orthology

 Pfam domain
No Pfam domain signature was recorded for FUN_022914-T1 in Siderastrea siderea.
 InterPro
No InterPro signature was recorded for FUN_022914-T1 in Siderastrea siderea.
 PANTHER
PANTHER termDescriptionSource
PTHR37962
all species →		MALE STERILE (3) 76CAInterproscan

 Gene Ontology
No Gene Ontology signature was recorded for FUN_022914-T1 in Siderastrea siderea.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_022914-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_022914-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
26TPM > 0
7Conditions
245.6Max TPM
12.7Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 5 4.02 32.91
holobiont · low.pH Control.temp 20 5 16.43 102.40
holobiont · control.pH_high.temp 20 8 13.31 97.15
holobiont · control.pH Control.temp 19 5 21.00 245.59
Whole organism 4 2 0.98 3.49
unannotated 1 0 0.00 0.00
live coral tissue/skeleton 1 1 2.21 2.21

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

TOP