Detailed information of FUN_022925-T1 in Siderastrea siderea

Genomic Location: contig_21:3117189...3125097
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
No Pfam domain signature was detected for FUN_022925-T1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR001368
all species →		DomainTNFR/NGFR cysteine-rich regionInterproscan
IPR047526
all species →		FamilyTumor necrosis factor receptor superfamily member 19/27/EDARInterproscan
IPR011029
all species →		Homologous_superfamilyDeath-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12120
all species →		TNFR-CYS DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0005886
all species →		Cellular Componentplasma membraneInterproscan
GO:0038023
all species →		Molecular Functionsignaling receptor activityInterproscan
GO:0043123
all species →		Biological Processpositive regulation of canonical NF-kappaB signal transductionInterproscan
GO:0046330
all species →		Biological Processpositive regulation of JNK cascadeInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_022925-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_022925-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
6TPM > 0
7Conditions
22.2Max TPM
0.5Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 4 4.02 4.93
unannotated 1 1 22.17 22.17
live coral tissue/skeleton 1 1 7.79 7.79

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

TOP