Gene detail

Detailed information of FUN_022926-T2 in Acropora pulchra

Genomic Location: ptg000017l:1632564...1646427
NR annotation: XP_015771358.1, PREDICTED: ATP-binding cassette sub-family D member 2-like [Acropora digitifera]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_022926-T2

TCACTACTACGTTTTGTTTGTTTATTTATTCATTTTTTTTTTCATTCCGAATATGTCTAGAAACCGCATATGCTACAAAAAAGAAAAAAAAACATACCGAGAGCCTCTCTCAATAGATCTTTTTTGCTTGTCGATTTCAGTGTTTCCCCACTGCAAATCACGTGATGATACCCAGGAGAATATTTTCTTTCAAAGTTGGACATTCTCATCCTCGCACGCAGTCTCTTTAATAAATACGACTAAAAGGTTCAAACGTCCCGTAGTAGGTATCTTCACATGATCCGTATTTGGGAAACAAAATCGACAGGCGAGCAAGATTTATTAAAAATACTACCACTGATTAGCTTTGACGGCTCCTACTTGATGAGATCCTAAGTATACTAGTACTGATAGCCTTCTGAAAAAGCACGTTCTCTCACTAAGATTCTGATCAGATTTAATTAAATTCTTACTGCTTGGTTATTGGAAACTCTGTCTAAATTTTGCAGAACAAGCGGTGCAATTAGTTTTCGTATATTTTCATTCATGTCCATTCGATATGAGCTCGTAACTGGAATTAAGTGACCCGTACTTCACATGAACTTAATTCATGTAAATTAGTGTAATTGAGTTTGGCAAATGCGAAGTACGGCGTTTAACCCGGGCCTAAGTCTACAAACTCTGTTTCAAACGACCAGAAAGTGAGGAACGCATGGAAGATAAACAAAGACGGTGGAGGAGGAGTAGGAGTGGGGCGACAAGAGGGCGAAAGCGGATTGGGTTTCTAAACAACATGGCCTCCGTGACGTCACAAGTTTTATTTTCAACGCTGTGTGAGGGCATTCAATCAATTAATTGACACGTTTCAACATAATCCCTCGTGTAAATGGCACCTTTTACAAAGAGACACGCGAAGGTTGTAGGAGTCGCATCTTTAACAATAGCTGGCCTATACTTTGTAAAGAAGTGCGGTCCGAAAATTGGGAGGAAGATCTTGATACACATTCAAAGAAATGGAAACAAGGCTAATCTCACAGTCACTGATTCTTCTCAAATTAACAGGTCAAAGGTTAAACTGAGAAATGCAGGTTTAGATTATGAATTTGTTTGCGAGGCATGGAAGCTTTTAAAGATACTCTTCCCTGGTCTGTGGACGAAGCAAGTCGGATTGTTGTTTCTGCATTCAGTCTGCCTATTCATAAGAACGTTTTTGTCCATTTACGTCGCAAACCTAGACGGTCGGATTGTAAAGTCGGTCGTGCAAAAAAATGTCCCAAAATTTGTGCTGCTGCTTGCGAAGTGGATTGGCGTAGCAATACCCGCAACGTTTACAAACAGCATGATTCGTTACCTGGAGAGTAAGCTTTCACTGGCTCTACGTACAGAACTTGCAAACCATGCATACGAGAAGTACTTCACAAAAGAAACTTATTATCGTGTGGGAAACCTGGATGGAAGAATGGAGAATGCGGACGAGTGTCTAACTGAAGATATCCGCATGTTTTGCAGTTCAATAGCTCATCTTTACTCTCATCTAACTAAGCCTTGCCTGGACGTGTTTGTCATTTGCTGGACTTTGAATGAAATGGCCGTGAAAAGGGGAACTTCCTGGAAACTCCCCTCATCGATAGCAGCTGTCGTAGTTTGTGTTACTGCTGTTATTTTACGAAGACTAAGTCCCAAGTTTGGCAAGATTGTTGCTGAGGAGTCACAAAAACGAGGACAGCTCAGGTTTCTCCACTCTAGAGTTATCACTCATGCTGAGGAGATAGCTTTTTATGGTGGACACAAAGTTGAACTTCATTTGCTGAAACAGAGTTTCCAGTCATTGGCACAGCAAATGGAATTACTGTTTAGCAAACGCCTGTGGTTCATCATGCTAGAGCAATTCCTGATGAAGTATGTGTGGAGTGCTTCTGGTCTGGTCATGGTGGGATCAAGTATTTTGTTAGGAAATGATGCTGGCAGTGGGCAAGAAGGTTTAGCTGATCATGGTGTCAGTGAAAGAACACAGCTCGTCACAACATCCCGCTCACTTATGCTTTCTGCTGCCGATGCCATAGAGAGGATCATGTCCTCATACAAAGAGATTATAGAGCTGAGTGGTTACACTAGCCGTGTCTCAGAGATGTTTGTGGTGTTTGAAGAAGTTCAAAGAGGCCATTGTCAGAAACAAACCTCTCAAAAGCCAATGGAAAGAACAGATTCCATCGACAAAGCTGAAGAATTGCCCAGTTTGGGAAGTCACGGAGAGGTTGTTGACTTGAACCAGATGCCTGGTGGTGAGGTTATTGATACTGAAGGAAGCATTACCCTCAAGGATGTTGCAATCATAACACCATGTGGGGATGTTGTTGTGTCAAGTTTATCTTTTGAGATGGAACCTGGGATGCACCTGTTAATAACTGGCCCAAATGGTTGTGGAAAGAGCTCTTTGTTTCGTATTCTTGGTGGATTGTGGCCAGTTTACAAAGGTTATTTGGCAAAGCCGCCTCCAAGTCATTTATTTTATATTCCTCAAAGACCTTACATGCCCATTGGATCTCTTCGCGATCAAGTCATCTACCCGCACGCTGTTGAAGACATGCACTCCAACGGCATCACTGAGGAACATCTGGAGGCTATTTTAGCCATCGTTCATTTACAGCATATTGTTAAACGAGAGGGAGCCATTCAAGCTTCTCTCTTTACCCTTTCTTGTAAAGAGTATATTTTTGGATGACTAAAGGTCAAGGATGGGATGTGGTGAAAGAATGGAAGGATGTGTTTTCTGGAGGAGAAAAACAGAGAATGGGCTTGGCGCGCTTATTTTATCACAGGTTTGTTGATTCAGTTCACCGCAACGTGACATCGGACAAGTAAGGCATGGGTTCGAAAATGAGTTCGTGCCTGGAACTGGAGACCTTGAGAGGGAGGGAGGGTAGCCGAGTGGACAGGCGAAGGACTTGAAATGTCATTTCTAGAGTTCAAGCGCGCTCTTACAGTTCCCAGCTGGTCGGGGGGATGCAAAGCCGCTCCTTGCCATTCTAAATAATACTATGAAGTCTACTTCACGCTTGCTGGAATTTTAAATGCACGTCTGTTCCCTTCGCTTACTTTTTTAGTGAAATTATAGAATTGTGGTATTCATGCCGGTGCACTAACTGTGATGTGTGTCATGTGTTTAGTTCATTTAATTTTTGCAGACCACAGTTCGCCCTTTTGGATGAGTGTACGAGTGCTGTCAGTATCGATGTAGAAGGGAATATCTTTCGAGCTGCTAAAGAAGCTGGGATTAGTCTGTTAAGCATCTCCCACAGACCATCACTGTGGAAATTCCACACACATCTGCTTCAGTTTGACGGCGAGGGGGGCTGGCGTTGGGAGGAACTCGACACAGCGACGAGGCTCTCTCTCAGTGAGGAGAAACAGAAGCTGGAGGCACAACTTGCAGGAGTTCCCAAGATGCAACAGAGGCTACATGAGTTGTGTAGTTTACTTGGAGAAGACTCGGTTTTATGCGAACAAAAATAGATCGGGTTCAGGCTTGTGGCCACTTCATGTCTCACATTTGTTTTCATGAGCATAAACTGACTTTCGTCGATGGTGGGTGTTTCGGCATGGCTCACTGGATTGCCTTGGCCGAATTGTGACCAAGGGTAATCAATTCAAAAATATTGCTATAAGTTAAGTTTGGTTATTCCTTAATTAATCTGTTCCTCGAACAAGGGACCTGAAACTGGGCTCCGCAGTTCTTGAACGATATATAATTTGTCACGCTACAACGTAACTAATCAAATACCACTGTCGTTACTCATGGATATCGAAAATTCACTTTATGCACTAGTCAATGTTTTCCATCCTGATTGGCTAACTAGGACGAACT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UBJ2	ATP-binding cassette sub-family D member 2 OS=Homo sapiens OX=9606 GN=ABCD2 PE=1 SV=1
F1RBC8	ATP-binding cassette sub-family D member 1 OS=Danio rerio OX=7955 GN=abcd1 PE=2 SV=1
Q9QY44	ATP-binding cassette sub-family D member 2 OS=Rattus norvegicus OX=10116 GN=Abcd2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001779 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00005 all species →	ABC_tran	ABC transporter	Domain	Interproscan
PF06472 all species →	ABC_membrane_2	ABC transporter transmembrane region 2	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003439 all species →	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR036640 all species →	Homologous_superfamily	ABC transporter type 1, transmembrane domain superfamily	Interproscan
IPR050835 all species →	Family	ATP-binding cassette sub-family D	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011527 all species →	Domain	ABC transporter type 1, transmembrane domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11384 all species →	ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005324 all species →	Molecular Function	long-chain fatty acid transmembrane transporter activity	Interproscan
GO:0005778 all species →	Cellular Component	peroxisomal membrane	Interproscan
GO:0006635 all species →	Biological Process	fatty acid beta-oxidation	Interproscan
GO:0007031 all species →	Biological Process	peroxisome organization	Interproscan
GO:0015910 all species →	Biological Process	long-chain fatty acid import into peroxisome	Interproscan
GO:0042626 all species →	Molecular Function	ATPase-coupled transmembrane transporter activity	Interproscan
GO:0042760 all species →	Biological Process	very long-chain fatty acid catabolic process	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0140359 all species →	Molecular Function	ABC-type transporter activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05676	ABCD2, ALDL1; ATP-binding cassette, subfamily D (ALD), member 2	EC:7.6.2.4	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.