Detailed information of FUN_022988-T1 in Siderastrea siderea

Genomic Location: contig_21:3908668...3915058
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF17776
all species →		NLRC4_HD2NLRC4 helical domain HD2DomainInterproscan
PF05729
all species →		NACHTNACHT domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR038359
all species →		Homologous_superfamilyConnexin, N-terminal domain superfamilyInterproscan
IPR041267
all species →		DomainNACHT, LRR and PYD domains-containing protein, helical domain HD2Interproscan
IPR027417
all species →		Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR051261
all species →		FamilyNOD-like receptor (NLR)Interproscan
IPR007111
all species →		DomainNACHT nucleoside triphosphataseInterproscan
IPR032675
all species →		Homologous_superfamilyLeucine-rich repeat domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24106
all species →		NACHT, LRR AND CARD DOMAINS-CONTAININGInterproscan

 Gene Ontology
No Gene Ontology signature was detected for FUN_022988-T1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_022988-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_022988-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
9TPM > 0
7Conditions
9.5Max TPM
0.3Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 1 0.47 9.47
holobiont · control.pH_high.temp 20 1 0.08 1.64
holobiont · control.pH Control.temp 19 2 0.29 3.89
Whole organism 4 3 1.68 4.05
unannotated 1 1 1.12 1.12
live coral tissue/skeleton 1 1 2.05 2.05

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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