Detailed information of FUN_023002-T1 in Siderastrea siderea

Genomic Location: contig_21:4099101...4113809
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00554
all species →		RHD_DNA_bindRel homology DNA-binding domainDomainInterproscan
PF16179
all species →		RHD_dimerRel homology dimerisation domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011539
all species →		DomainRel homology domain, DNA-binding domainInterproscan
IPR008366
all species →		FamilyNuclear factor of activated T cells (NFAT)Interproscan
IPR002909
all species →		DomainIPT domainInterproscan
IPR008967
all species →		Homologous_superfamilyp53-like transcription factor, DNA-binding domain superfamilyInterproscan
IPR032397
all species →		DomainRel homology dimerisation domainInterproscan
IPR037059
all species →		Homologous_superfamilyRel homology domain (RHD), DNA-binding domain superfamilyInterproscan
IPR014756
all species →		Homologous_superfamilyImmunoglobulin E-setInterproscan
IPR013783
all species →		Homologous_superfamilyImmunoglobulin-like foldInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12533
all species →		NFATInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0003700
all species →		Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0006355
all species →		Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0000978
all species →		Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981
all species →		Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0005667
all species →		Cellular Componenttranscription regulator complexInterproscan
GO:0006357
all species →		Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0008134
all species →		Molecular Functiontranscription factor bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_023002-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_023002-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
33TPM > 0
7Conditions
359.7Max TPM
64.3Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 7 63.31 359.75
holobiont · low.pH Control.temp 20 5 33.95 238.47
holobiont · control.pH_high.temp 20 8 69.36 266.87
holobiont · control.pH Control.temp 19 7 39.78 197.22
Whole organism 4 4 203.47 264.74
unannotated 1 1 238.62 238.62
live coral tissue/skeleton 1 1 328.03 328.03

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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