Detailed information of FUN_023017-T1 in Siderastrea siderea

Genomic Location: contig_21:4332490...4342109
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF09430
all species →		EMC7_beta-sandwER membrane protein complex subunit 7, beta-sandwich domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR039163
all species →		FamilyER membrane protein complex subunit 7Interproscan
IPR019008
all species →		DomainER membrane protein complex subunit 7, beta-sandwich domainInterproscan
IPR013784
all species →		Homologous_superfamilyCarbohydrate-binding-like foldInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13605
all species →		UNCHARACTERIZEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0072546
all species →		Cellular ComponentEMC complexInterproscan
GO:0030246
all species →		Molecular Functioncarbohydrate bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K23568EMC7; ER membrane protein complex subunit 7-Membrane traffickingko04131deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_023017-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
6TPM > 0
7Conditions
99.3Max TPM
3.8Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 4 42.30 51.22
unannotated 1 1 55.02 55.02
live coral tissue/skeleton 1 1 99.33 99.33

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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