Detailed information of FUN_023071-T1 in Siderastrea siderea

Genomic Location: contig_21:5045945...5073636
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04516
all species →		CP2CP2 transcription factorFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR040167
all species →		FamilyTranscription factor CP2-likeInterproscan
IPR007604
all species →		DomainCP2 transcription factorInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11037
all species →		TRANSCRIPTION FACTOR CP2Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000978
all species →		Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0001228
all species →		Molecular FunctionDNA-binding transcription activator activity, RNA polymerase II-specificInterproscan
GO:0003700
all species →		Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006357
all species →		Biological Processregulation of transcription by RNA polymerase IIInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K09275TFCP2; transcription factor CP2 and related proteins-Transcription factorsko03000deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_023071-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
13TPM > 0
7Conditions
121.6Max TPM
6.9Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 2 5.71 78.69
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 2 9.42 121.61
holobiont · control.pH Control.temp 19 3 5.59 46.46
Whole organism 4 4 28.78 31.48
unannotated 1 1 13.38 13.38
live coral tissue/skeleton 1 1 50.39 50.39

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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