Detailed information of FUN_023160-T2 in Siderastrea siderea

Genomic Location: contig_21:6280039...6305088
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01074
all species →		Glyco_hydro_38NGlycosyl hydrolases family 38 N-terminal domainDomainInterproscan
PF09261
all species →		Alpha-mann_midAlpha mannosidase middle domainDomainInterproscan
PF17677
all species →		Glyco_hydro38C2Glycosyl hydrolases family 38 C-terminal beta sandwich domainDomainInterproscan
PF07748
all species →		Glyco_hydro_38CGlycosyl hydrolases family 38 C-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027291
all species →		Homologous_superfamilyGlycoside hydrolase 38, N-terminal domain superfamilyInterproscan
IPR000602
all species →		DomainGlycoside hydrolase family 38, N-terminal domainInterproscan
IPR015341
all species →		DomainGlycoside hydrolase family 38, central domainInterproscan
IPR011013
all species →		Homologous_superfamilyGalactose mutarotase-like domain superfamilyInterproscan
IPR028995
all species →		Homologous_superfamilyGlycoside hydrolase families 57/38, central domain superfamilyInterproscan
IPR041147
all species →		DomainGlycosyl hydrolases family 38, C-terminal beta sandwich domainInterproscan
IPR037094
all species →		Homologous_superfamilyGlycoside hydrolase family 38, central domain superfamilyInterproscan
IPR011682
all species →		DomainGlycosyl hydrolase family 38, C-terminalInterproscan
IPR011330
all species →		Homologous_superfamilyGlycoside hydrolase/deacetylase, beta/alpha-barrelInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46017
all species →		ALPHA-MANNOSIDASE 2C1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004559
all species →		Molecular Functionalpha-mannosidase activityInterproscan
GO:0006013
all species →		Biological Processmannose metabolic processInterproscan
GO:0003824
all species →		Molecular Functioncatalytic activityInterproscan
GO:0005975
all species →		Biological Processcarbohydrate metabolic processInterproscan
GO:0030246
all species →		Molecular Functioncarbohydrate bindingInterproscan
GO:0009313
all species →		Biological Processoligosaccharide catabolic processInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K01191MAN2C1; alpha-mannosidaseEC:3.2.1.24
Membrane traffickingko04131deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_023160-T2 across 85 RNA-seq samples of Siderastrea siderea. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
0TPM > 0
7Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 0 0.00 0.00
unannotated 1 0 0.00 0.00
live coral tissue/skeleton 1 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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