Gene detail

Detailed information of FUN_023228-T2 in Acropora pulchra

Genomic Location: ptg000017l:5271565...5285648
NR annotation: XP_029195508.2, cytoplasmic dynein 2 intermediate chain 2-like [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_023228-T2

ATTTTGGTACAGTTGTAAACACTGTTTCACATTTTTTCGAGCAACAACAAATTATTAAATGCGGCACATGAATTCAAAATTCCAGCAATATTATGTTTAGCGATGAAGCACAAGAGGCTGTAGAATTTCTTTCATCGTGGAAAACGCAGAGATCTGTCAAAGATGGTTTCGCCCAGACTAGTGAGATTATAACATATGAAGCTAATGTGCAATCAGTTCATAAAGTAAATCAAGAGGTCCAAACAGAAGAAGATGAAGATGACAAAAGGAAGCTTATATTTGTTGTTGAAGATGAGAAACCAGTTAGAAAGCTTGCACCACTTTTTAATTTTTATTTTTCTATTTTAAGACACAATGTTTATGTCCACAGAGGCACTCAGTGTTCAGAAAAACTTAATTTTGTCTCTTTTGCAGGATCTTGTAAATTTCATCCGCAGAGTGTATCCTGAATTTAGCCAGCAGCTTCAGCTTAACATCACAAGTCATGCATTTGATGGGTTTGAGGTTGACTTAGATGAATCAGCTAGTGCGGTTTCTTGCCTTTACACATTGACAAATGCAGATCTGCTTGAGGAAGAGCTGCAAGTAACTGGGTTGTCTTGGAATTCTACAGGATCAGTTGTTGCAGCTTCATATGGAAGGTTTGACCACGAGGACTGGTGCACACACAAGTCAGCACTTTGCACCTGGAACATTGATCGAAGAGCCATTGATCCAAATAAACCTGATGTCACAATTGACTTAGCTAGCTGTTTGATGTGCATCGCATTTCATCCCAAGCTACCATCATTTATTGCCGGAGGAACATTCAATGGTGAAGTGCAAGTGTGGGACTTAGGAAGAGAGGATGAAACCCTTGCAGCCACTTCAGGGATGGAATCAGATTCGCATCGTGAACCAGTAAGCAAGGTTTTATGGACCATGGATCCAAGTTCAAAGGCTAGCAAATATCAGGTTATCAGCATCAGCGGGGATGGCAAGGTGCTCGTCTGGCAAATGTCACCGGGGTCGCGTGACCTCAAATTAGTCAGCGGTTTTATTTTACAAACGGACAGTGTTCCGAGGAGCATGCGCTTGAGCAAAGCACGTGGTGATGCTGAAATTGGAGTGACCAGCATGTCGTTTTCTCACGAAGATCGGAGTCTTTTCATCCTGGGATCAGAAGCTGGGGGAGTGTTTAAATGCTCCATGACTGCAAGAGCGCCACCACTGACAAACACGCAGAGCTCCGTGCCGCTACGTTCTCCAGTGACGTTTGCGTTTTCCCCTCATTTCGGTCCTGTCTTTTCTGTGGATTGTTCGCCTTACCACAGGAATCTAGTCCTCACATGTGGCACCGATGCATCAATCAGATTGTACTCCATGTTACAGTCGAAACCGCTTTTCTCAGTGGAACCTGGGGCGGGTTATTTGTTCAGGGTGCGATGGTCCCCTTCTCGACCATTGGTCTTTTCAGCGGTTACAGGTGATGGTCGACTTCTCATTTATGACTTGAAGGTAAACCGCATCAACCCATCTGTTTCGTTAGAAGTTACAAGCGATAAATCGCCAGTATATTCTCTGGAATACAACCTTCAAAGACGGCAGATTGTTGCTACAGGAGACTCCCAGGGTCGAATTAAAATATGGCGACTGAGCGATGACTTAACGAACCAGAGTGCTCGGGAAGAAGAATTCTTAGCTGCGATAGCAAATGATGCACAAGCCGAGTAAACATCAAGCTTCTCTCCGCAGAGAGTTGATCAGGAGGAGAAAATTGCTGGCCATGAGGTCGGCGTCTGACATTTTTAAGCTGTGTGTTTGACTTTGGGTGATGCTCATAGACGCATACGCCGCTTTCACTTGCAACAGAAGCGCGAGGAAAACTTGTTGGGGAGAGACTCACACTTTCTAGGCCGATCCGAGTTGTGTCGTTGCTTTTGAGTATTGGAAACTTCTTGTTTTCGTTTGTCAAGAAATAACATGCGGAGGGTAAGACCAGCCCCAAGAGCCAGTAAACTGTCAAATAACAAAAAGGTATTTGGCAAAAATAATTTTGTTTCCAAATTTTGTCGACTTCTTCCGGACTATGATCAATTGATGACTTCATAATCTTTCTGCTCGCTCCCAGATCCTTTTGCCGATGTACCTGTGGTGTCATCCGCTGACCGACTTGACATTTCGTCGTCGCTTTCATAGTAACTGTTCGAGTTCCCGTCGTTATTGCTCGTAAATTGCTCGCCAGACTCGGAATAATTTTGTTGAGCTTTCTCAGTGTCCGAGTTAGCATCTAGGGAAGAATTCCCTTCCGTTTGTTCCTTGTTAGCCAAAGTACTGCTATTTTCCATCAAATTATTATAATTGTCGTCTTCATCAACCGCCAAGCTCTCGACTTGAGTTCTCTTGGCGTCACTCTGTCCAACCTTCCGATTTTTGGTTCCCTTCCACTTTGAACTTCTGTAAAGCGAAAAGTCTATTTTGCCTTTAGAGAAGTGTTTTGTTGATCTATGACGTTTGCCCTTTGCCACCCGACCTTTCTTTATCATCTGAAGCTTGTGCATCAACTTATCAATCTTAGTCTTCTCTTTCATCTTCGCGTACAGCATCGCCAGGGATTCCTTCGTCAATGGACTCTTTAGTTGAGGAACGTGGCCTTTCTTCCCTTTGTTTGTCAAATGAAGAATGTTCTTCAGCATCTCATAAACTTCTTTGTCGTGATTTGCATGAGTGCTAAATACTTTTCCAGCAATTTTTCCACTTTCTGTAGCGTTCTGAGAGGGTTGTTGGTACTTTTTCTCGATAGCCACCTTAGGTATCCCGTCAAGAACCTGTTTCAAAATCAACGAATTAGCCTTCGATGTCATCCAAGGGCCCCAATATCCCTGGTGCTCTGGTGGGTTCGCACGGTAGTCCCTCTCAGGGAACCACACAGGGAGAGCGTCCTTCTGGTATTCGACAAGCTTAGTAAGCAGTTGTTCAACTATGTCAAGGTTGGAGAACGCAAGATTATTGAACTCGCAAGGATCTGAAAGACAATTGAAAACATATTTATCTTCATGATTAAACATCAGCCTTCGTGAATCATGTTTGAACTGGATCTAGCGTGCGATGGAGGCTCAGCCTCAATAACCCTCTCGTTCCAGTGTACTCGCAACAACAAGAACATGACATCTTCACTAACAGTTAAACTTCAAATCT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5U4F6	Cytoplasmic dynein 2 intermediate chain 2 OS=Mus musculus OX=10090 GN=Dync2i2 PE=1 SV=3
Q96EX3	Cytoplasmic dynein 2 intermediate chain 2 OS=Homo sapiens OX=9606 GN=DYNC2I2 PE=1 SV=2
Q24246	Cytoplasmic dynein 1 intermediate chain OS=Drosophila melanogaster OX=7227 GN=sw PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004531 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR050687 all species →	Family	Dynein Intermediate Chain	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12442 all species →	DYNEIN INTERMEDIATE CHAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005868 all species →	Cellular Component	cytoplasmic dynein complex	Interproscan
GO:0007018 all species →	Biological Process	microtubule-based movement	Interproscan
GO:0042073 all species →	Biological Process	intraciliary transport	Interproscan
GO:0045503 all species →	Molecular Function	dynein light chain binding	Interproscan
GO:0045504 all species →	Molecular Function	dynein heavy chain binding	Interproscan
GO:0097014 all species →	Cellular Component	ciliary plasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22868	WDR34; WD repeat-containing protein 34	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.