Gene detail

Detailed information of FUN_023262-T3 in Acropora pulchra

Genomic Location: ptg000017l:5666866...5682378
NR annotation: XP_029195484.2, ATP-dependent RNA helicase SUPV3L1, mitochondrial-like [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_023262-T3

ATGTTTGCAACCTTACATCAGTCTTGTTGGTGGAATCACTGGCCCCTCTCTCAATGCGTCAGAAAACATTGCACCGGAACTTGGAGAAAGGTTCTGGGTTCAGCAGATTTTTACAACTGCAACAATAGATATTTTTCGTCAGGGAAGAGTTTCCATTACCTTTCTAAAACTTTTGCGACATGGGACTTTCATTTGCTTTCGTATTCGCATCTCCGAGCTCTTCAAAAACGGCTGATCGCTCGTAAACTGGGCCTGCACTCATCGAGCATTTTGCTTCAAAAAAGTGCTCCGGCGAGTGGCAATGGAGAAGACATTCTTGAAGGAAAGACAGGGCAAGTTATTTCAGATCACTCAGCAACTTCTGGACAAAGGAGCTTATCACCCTCCGACCAAGAAGTGAGCTGTAAAACATTTGCTGAGGAAGACCTGGAAAATATTCAGAATCTTGCAAAAAATGGAAGCTTAAGGAGTAAAACTTCGTCATGGAGCTCAAAAAATAAAAAAAAATTGTCAGAAAGAGAGTTTTCAGCCATCAAAGGTTCTCAGGACTTATCCTCGCGAAAGAAAACCCAACTTTCCCCAGGGAAAATGATGAACATTTTGTCCGACTTTGGTAAAGATGAACAAGTTAAAAAAGTTGCACAAAAAACTGGCATCAGTGGCCTGTTATTTGAGAAAATTTTTCTGGAGTTCAAAAGGAAGATTATTTCACAACTGAAACATGGAAATGATGAAATGCTGAGAGTTCTGAGTAAAACTTACTGCAATTCTGTTTCAACAGATGGCCCATCAAAGCTTTACCCTTTATTTTTTGCATTTGCACGCAAAGTGCATCCCATGTTAAACTGCATCGATGAAGTAAAAAAGATTTCAGACTTGCGTGGTCCTGCAGATCTGTTTCTGGAAGCCAGGGCAGTGAAAAGGAAAATCATATATCATGCTGGCCCCACAAACAGTGGTAAAACACACTCTGCTCTCGCGAGGTTTCGGGCTGCCAATACTGGAGTGTACTGTGGCCCACTGCGGTTGCTTGCAACAGAGGTCGCCAAAAGGACAAATGAAGCTGGAGTACTGTGTGACTTGTTGACTGGGGAAGATCGCCAGTGGGCAATTTCGCCAGAGGAACCAGCCAATCATATTGCAGCAACTGTGGAAATGTGCTCAACAGAGACATTTTATGACTGTGCAGTGATAGATGAAATTCAGATGATGAAGGACAAGGGACGAGGCTGGGCTTGGACAAGAACTCTCCTAGGTTTGCCCTGCCCAGAGATTCATGTTTGTGGTGAACATTCTGCAGTAGATATTGTCCAAAGATTGGTAGCCTCCTGCAATGATGAAATGGAGGTTTATCATTACAAAAGACTCTCACCTCTGCTTGTCACGTCTCATCGTAGTCTTGATGGAAAGCTAGAAAGGGTCAAGCCTGGAGATTGTGTGGTTGCTTTCTCCCAGCAGGAGTTGTATCGTTTGAGGAGAGAGATTGAAGAGAAAACCAGCGGGAAATGCGCCATAATTTATGGTGGCCTTCCGCCAGCCACTAAGATAGAGCAAGGAAGCAAATTTAATGATCCTGAAGATGAATGCAGTGTGTTGGTGGCATCTGATGCTATTGGAATGGGGCTTAATTTGAACATTAAACGGGTTGTCTTTAGTAAACTGACAAAGTTTGATGGCCATGAAGTAGTGGAGCTGTCTCCTTCTCAAGCTAAACAGATTGCAGGGCGAGCTGGAAGATATGGATCCAATTATCCCAGTGGTGAAGCGTTAACGCTTAAAAGAGAGGACTCAAAGCTTCTACACTCGTTGATAACTACTCCAACGGAGGATGTTAAGGCAGCTGGGTTAGCACCAACGTTGGAGCAGATTGAAATGCTTTCGCAACAGCTTCCAGATGCCAGCCTTGTCAAACTCTATGACGTTTTTGAAAGCGTGGTGCAGCTGGATGGGGCGAACTATTTCATGTGCGATTTGGAATTCAAAAAGGTTAGTACATTTAGAAGTCCAGAAGTGCTCAAAATGAGATGA

Transcript

FUN_023262-T3

GCGAACCGCGAGGGTCGGGGTTATGGCAACAGCGAAACCTCGCCTGTTACGGAATACCAAAGACTCTGGGAACTAGGACAGGACAAAGATGGCGTACGAAAGCGAGTGAAATTCACTTGATTTTAGTTTGATTTCCTTTTACTGATAAGCAAATGTGGACATAAAATTATGTTTGCAACCTTACATCAGTCTTGTTGGTGGAATCACTGGCCCCTCTCTCAATGCGTCAGAAAACATTGCACCGGAACTTGGAGAAAGGTTCTGGGTTCAGCAGATTTTTACAACTGCAACAATAGATATTTTTCGTCAGGGAAGAGTTTCCATTACCTTTCTAAAACTTTTGCGACATGGGACTTTCATTTGCTTTCGTATTCGCATCTCCGAGCTCTTCAAAAACGGCTGATCGCTCGTAAACTGGGCCTGCACTCATCGAGCATTTTGCTTCAAAAAAGTGCTCCGGCGAGTGGCAATGGAGAAGACATTCTTGAAGGAAAGACAGGGCAAGTTATTTCAGATCACTCAGCAACTTCTGGACAAAGGAGCTTATCACCCTCCGACCAAGAAGTGAGCTGTAAAACATTTGCTGAGGAAGACCTGGAAAATATTCAGAATCTTGCAAAAAATGGAAGCTTAAGGAGTAAAACTTCGTCATGGAGCTCAAAAAATAAAAAAAAATTGTCAGAAAGAGAGTTTTCAGCCATCAAAGGTTCTCAGGACTTATCCTCGCGAAAGAAAACCCAACTTTCCCCAGGGAAAATGATGAACATTTTGTCCGACTTTGGTAAAGATGAACAAGTTAAAAAAGTTGCACAAAAAACTGGCATCAGTGGCCTGTTATTTGAGAAAATTTTTCTGGAGTTCAAAAGGAAGATTATTTCACAACTGAAACATGGAAATGATGAAATGCTGAGAGTTCTGAGTAAAACTTACTGCAATTCTGTTTCAACAGATGGCCCATCAAAGCTTTACCCTTTATTTTTTGCATTTGCACGCAAAGTGCATCCCATGTTAAACTGCATCGATGAAGTAAAAAAGATTTCAGACTTGCGTGGTCCTGCAGATCTGTTTCTGGAAGCCAGGGCAGTGAAAAGGAAAATCATATATCATGCTGGCCCCACAAACAGTGGTAAAACACACTCTGCTCTCGCGAGGTTTCGGGCTGCCAATACTGGAGTGTACTGTGGCCCACTGCGGTTGCTTGCAACAGAGGTCGCCAAAAGGACAAATGAAGCTGGAGTACTGTGTGACTTGTTGACTGGGGAAGATCGCCAGTGGGCAATTTCGCCAGAGGAACCAGCCAATCATATTGCAGCAACTGTGGAAATGTGCTCAACAGAGACATTTTATGACTGTGCAGTGATAGATGAAATTCAGATGATGAAGGACAAGGGACGAGGCTGGGCTTGGACAAGAACTCTCCTAGGTTTGCCCTGCCCAGAGATTCATGTTTGTGGTGAACATTCTGCAGTAGATATTGTCCAAAGATTGGTAGCCTCCTGCAATGATGAAATGGAGGTTTATCATTACAAAAGACTCTCACCTCTGCTTGTCACGTCTCATCGTAGTCTTGATGGAAAGCTAGAAAGGGTCAAGCCTGGAGATTGTGTGGTTGCTTTCTCCCAGCAGGAGTTGTATCGTTTGAGGAGAGAGATTGAAGAGAAAACCAGCGGGAAATGCGCCATAATTTATGGTGGCCTTCCGCCAGCCACTAAGATAGAGCAAGGAAGCAAATTTAATGATCCTGAAGATGAATGCAGTGTGTTGGTGGCATCTGATGCTATTGGAATGGGGCTTAATTTGAACATTAAACGGGTTGTCTTTAGTAAACTGACAAAGTTTGATGGCCATGAAGTAGTGGAGCTGTCTCCTTCTCAAGCTAAACAGATTGCAGGGCGAGCTGGAAGATATGGATCCAATTATCCCAGTGGTGAAGCGTTAACGCTTAAAAGAGAGGACTCAAAGCTTCTACACTCGTTGATAACTACTCCAACGGAGGATGTTAAGGCAGCTGGGTTAGCACCAACGTTGGAGCAGATTGAAATGCTTTCGCAACAGCTTCCAGATGCCAGCCTTGTCAAACTCTATGACGTTTTTGAAAGCGTGGTGCAGCTGGATGGGGCGAACTATTTCATGTGCGATTTGGAATTCAAAAAGGTTAGTACATTTAGAAGTCCAGAAGTGCTCAAAATGAGATGAAAGTTGATTCTGATAAATCTCATCAAGTGCCTGCAAAACTATGTTTATCTGGTAGACAGTGAATTAAGATACCTTAACCTTAAACACCGGACGGAGCCTCCGTCTTCATTTATTTCTTGAGTTAACCCTTTCCCTAGTAGATTTATAAATAGAACTATTTTCTTTTGCAATGCGCTTGAATCGCATGAATGCGCTTGCTCTGCAGTTTGACGTACGACAATACTATTGTCATTTCTCTATTTTCATTGGCTCTTTTCTCAATCTATACCAGCCACGAAATTTAAATTCTTCACAAGTACTTGACAATCTTTTCTCAATCGGCCAGGGAAAGCTCTTTAGGGAACCATTCTATTTATAAATCTACTCGGGAAAAGGTTGACTCCAAGGGCTTGTAAGCGAGATGGAGGCTCCATCATGCACATTCTAGTTCTCTTTCCCTTTTTTCTAGAAAATAGCCCATAAAATACGCGGCCTTCCGCTCTCCATAACTGATCAGTACGTTTTCAGTACAGCCCCTCTCAACGCCAAGACAATCGACTTTGCTCCGAAGGTAAGAATTGATTCACAATTTGACCAATTTGACAGGGACTTGATCACTTCATTGTCAACAAATTGCACGCACCAAAAAGGGTTTACCTTAAGTCAAATCAGCAACAGAAAGGTATATTTCCACTTACGAGTGGAAAGCGAGCGTGTTTTAAAATACGCTCCCACTCATCTCAATACATCTGGATGTAATGTTTCAGAACTCCGCAAAGTTCGCCTATGTCTAGGAACAAGTGAAATAGCTGCATGCTCAATTTTGAAAATAGTCAAACCACCTTTTTTTAAATAGTCGGGTTAGCATTTTTTTTATTGGCTTCTTCATCTAGGTTGGGTTTTTTGGGTTACAGTTTTGGCTTCTTTGAGGAGAGGTATTAGAAGGACACCATGACCATTTTCGTCCGCATTTCTCGCCAAAAGTAATAATTACGTTAACGGAAAGGGCAAAATGATTTTGTGATGCTTAGTGCATGCCTCCATTTGAGTACGATCCGGAAAATACTTTAATTGCAGGGAAGCTTCGATTATGAACAGCATTGGACGTCCACTTCAATTTGGTACATTCGATATAGAAATGTCTCGATCGATGATGTATGAACAGGATCCCTGCATGATTTTAAAATTAAGAGAAAAAGAGCGTCGCTTTTGAAGCAATGACATAGGTTTGAATGAATCCGAAGCAACTGAATTTGTAAAGAGACATAGAGATATTTCTCAGTTCGAAGTATACTCGGTGGATGAAAGAACTACAGACAATAGTATCTTTGTGCTGGCCTTAAGCATTTTTCATAATGTTTTTGTTTTGTGATTTTGCAAAGCTGACGTTGTCAGTTTTTAATTTAGCTATGTTAATAATTAAACTTTCGATTATTACTCAGTCTCCCACCGACGCAGCACCAGTTTCTTTGCAAACCAGTCGCTTATTGTTACGTTGTAAAGTCGAGTTTTTCATTATAAACTGTGTGATACCATTACGGAAGAGTTCGAACAACACTGACTCTTGGCTGTTTCTTTCAGTTTGCTTTTAATGTGTGTCACGAAATCGAATTAACGTCGTCAAGATTGAAGAAGTTAATTGACTGGCCTCCTAAGGTTCCCAGGTCTCTTGCTCAGCTGCAGAAATTGGAGGCGCTTCATGAGGGACTGGACTTCTATCTTTGGCTCAGGTGCGGACAAGTCTTTTTGGTTTATTGCAATTATGGATTTCACCAAACTAATTGTGGTTTTCCTAATCGCCACGCTTTCGAAGTTGAGATACCTGATTGGCAAGGATTATGCGGGAAACTAATCAAGGTCAGGAAGGAATGCACGTGATCAAAAAGAACTAACCTGGGAGTTCGATAAAACGGGAGCATTTCTTACACTTTATTTGGTTAAATTGACCTCGAGGACTTAATGCTCAGACTATAGTAATTTCTTTCTTTCAATAAATCCCTGTGTTTTTTTTATGACTTTTTTTTTTATCGTTTTGGCTCCTTGCCTTTTGAAATTATGTTACAGCGTGTCTTTGTAACGTTTTACCGCCGTCAAAGATCGATGGGATACCGCACAGTATTTCTTTTGTTTTTTTTTATTCGGGATACTGCTTATGTTTCACTAGTCGTACGCATGCGCTTCGATGAAATCTGGTTTTCATGTCGCTTTTGGCCAAACCCGACCTTGCATCAAGTCAAAGCTAGGTTTCAACTGAGGAAGGTTTGCAGCGAAACACAGATATATGCATAAATACGTATTATTATCAATACGCGCGGCCAAATGACAAACTGCCCTCTGTAAAACGCGCCTTCTTGCGGGCCAAACGAGAAATGCGAGGGCGACAAATGCATTTGCCGCCCTGATTCTGATTGGCTGCAAATATGTTAAATTTACTTCGTTTGGCCAATGAGAACCTGAGGATACCATTTCAATGTCAAAGATGGCGCTAATTTGAACTTGCTCACTTTGTAGTTCTCGTAGCATCATTTGCGCCCGAGCGGAGCCACAAATAAACTATATGCCCTCCAAAAGTCATAGGATTGTCCTAATCTTTATTTGAACACGATAATTTTCAAAATTATTTACGCTTTTGGGTTCGTGTGTATTTCTTCCTTACAGTTATCATTTTCCGGACATCTTTATGGATACAGAGCAAATCTGTGAAATGCAGGAGCGTGTGCAAGGCATCATTGGAGAAGTAGTGTCATTAGATACACTGAAGAATCTCACAGATCGATGGCGCCAGCGCCGTTCATCGGAAGCGTATAAAACCGCTACTGTTGGAAAGAGGCAGCGCCGCGACGCTGGAGCGCGCTTTAGAAAAGACATCCGACGACTCAAAGGGAATAAATTACTAGTTTAGTGAGTATGGGAATAGAGCGGTTTTCAAATAACTGTCGGAAGTAATCACGCTCAGTATTTGGTTTATAGTTGCTTTTGGTTTTAGCTGCTTTTCTCATTGGCTCTGAAAAATCTTAATTTATTACTCTAATTACTGTAATTTGTTTCATTTAGTTTTCTTTCTTTCCCAAATGTCATACTGGTCAATATTCAATTATTATTATTATTACTATTTTATTTCCCATTTCTTTGCTTTTTTTGCTTTCATTTCCTGATTTGTACTTTATATTTAGTTCAGTAAGTTATTTTAATGTACTGTAAAATAATACTTAATTTTATGCGTCAAACCACTGCTCGCCTCGAACAGCCGAAGCTAAGTAATTAATTAATTTTCTTATTTAACCATGTCTCTCTTTCACATTTTTCAGAGAGAACGTGTTGGTATGGCGTCAAGCGAAGAGACCACTGACGCCTCCGTTGTATGTAACACCTCTACGGAAATTTAACTTTGCAGCAAACAAAATTATGAAATATTTTAACATTTGCCATTAAAGATCTTGCATTCAACGAAAACTAGTGAGCAATTTTTATCGATGTTGAATTAAAAGTCTCCGGGCAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A4IG62	ATP-dependent RNA helicase SUPV3L1, mitochondrial OS=Danio rerio OX=7955 GN=supv3l1 PE=2 SV=1
Q5ZJT0	ATP-dependent RNA helicase SUPV3L1, mitochondrial OS=Gallus gallus OX=9031 GN=SUPV3L1 PE=2 SV=1
Q8IYB8	ATP-dependent RNA helicase SUPV3L1, mitochondrial OS=Homo sapiens OX=9606 GN=SUPV3L1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007002 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF18114 all species →	Suv3_N	Suv3 helical N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR044774 all species →	Domain	Suv3, DEXQ-box helicase domain	Interproscan
IPR050699 all species →	Family	RNA/DNA Helicase	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR041453 all species →	Domain	Suv3, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12131 all species →	ATP-DEPENDENT RNA AND DNA HELICASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003724 all species →	Molecular Function	RNA helicase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0000965 all species →	Biological Process	mitochondrial RNA 3'-end processing	Interproscan
GO:0006401 all species →	Biological Process	RNA catabolic process	Interproscan
GO:0045025 all species →	Cellular Component	mitochondrial degradosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_023262-T3.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.