Detailed information of FUN_023567-T1 in Siderastrea siderea

Genomic Location: contig_21:11283152...11294567
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
No Pfam domain signature was detected for FUN_023567-T1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR002048
all species →		DomainEF-hand domainInterproscan
IPR039800
all species →		FamilyCalcium uptake protein 1/2/3Interproscan
IPR018247
all species →		Binding_siteEF-Hand 1, calcium-binding siteInterproscan
IPR011992
all species →		Homologous_superfamilyEF-hand domain pairInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12294
all species →		EF HAND DOMAIN FAMILY A1,A2-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005509
all species →		Molecular Functioncalcium ion bindingInterproscan
GO:0006851
all species →		Biological Processmitochondrial calcium ion transmembrane transportInterproscan
GO:0036444
all species →		Biological Processcalcium import into the mitochondrionInterproscan
GO:0051560
all species →		Biological Processmitochondrial calcium ion homeostasisInterproscan
GO:1990246
all species →		Cellular Componentuniplex complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_023567-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_023567-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
18TPM > 0
7Conditions
253.0Max TPM
21.7Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 2 15.41 164.51
holobiont · low.pH Control.temp 20 2 10.35 147.54
holobiont · control.pH_high.temp 20 2 11.65 159.79
holobiont · control.pH Control.temp 19 6 51.34 252.97
Whole organism 4 4 15.09 18.39
unannotated 1 1 29.30 29.30
live coral tissue/skeleton 1 1 32.88 32.88

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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