Detailed information of FUN_023569-T2 in Siderastrea siderea

Genomic Location: contig_21:11305807...11360783
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Ubiquitin familyE3|E3 adaptor Cullin RING|DWD · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF06469
all species →		DUF1088Neurobeachin-like, DUF1088DomainInterproscan
PF14844
all species →		PH_BEACHPH domain associated with Beige/BEACHDomainInterproscan
PF02138
all species →		BeachBeige/BEACH domainFamilyInterproscan
PF20426
all species →		NBCH_WD40Neurobeachin beta propeller domainRepeatInterproscan
PF15787
all species →		DUF4704Neurobeachin/BDCP, DUF4704 alpha solenoid regionRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001680
all species →		RepeatWD40 repeatInterproscan
IPR016024
all species →		Homologous_superfamilyArmadillo-type foldInterproscan
IPR010508
all species →		DomainNeurobeachin-like, DUF1088Interproscan
IPR036322
all species →		Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR036372
all species →		Homologous_superfamilyBEACH domain superfamilyInterproscan
IPR050865
all species →		FamilyBEACH Domain-ContainingInterproscan
IPR023362
all species →		DomainPH-BEACH domainInterproscan
IPR000409
all species →		DomainBEACH domainInterproscan
IPR015943
all species →		Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR046851
all species →		DomainNeurobeachin, beta-propeller domainInterproscan
IPR011993
all species →		Homologous_superfamilyPH-like domain superfamilyInterproscan
IPR031570
all species →		DomainNeurobeachin/BDCP, DUF4704Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13743
all species →		BEIGE/BEACH-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0005829
all species →		Cellular ComponentcytosolInterproscan
GO:0008104
all species →		Biological Processprotein localizationInterproscan
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0019901
all species →		Molecular Functionprotein kinase bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K24181LRBA; lipopolysaccharide-responsive and beige-like anchor protein-Membrane traffickingko04131deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_023569-T2 across 85 RNA-seq samples of Siderastrea siderea. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
0TPM > 0
7Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 0 0.00 0.00
unannotated 1 0 0.00 0.00
live coral tissue/skeleton 1 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

TOP