Detailed information of FUN_023575-T1 in Siderastrea siderea

Genomic Location: contig_21:11361096...11370087
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0009783 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF15501
all species →		MDM1Nuclear protein MDM1FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR029136
all species →		FamilyNuclear protein MDM1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR32078
all species →		NUCLEAR PROTEIN MDM1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0008017
all species →		Molecular Functionmicrotubule bindingInterproscan
GO:0046600
all species →		Biological Processnegative regulation of centriole replicationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_023575-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_023575-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
77TPM > 0
7Conditions
654.3Max TPM
189.5Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 18 219.30 496.59
holobiont · low.pH Control.temp 20 18 169.96 539.62
holobiont · control.pH_high.temp 20 17 199.17 654.27
holobiont · control.pH Control.temp 19 18 224.91 593.30
Whole organism 4 4 12.55 19.05
unannotated 1 1 11.43 11.43
live coral tissue/skeleton 1 1 8.16 8.16

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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