Gene detail

Detailed information of FUN_023672-T1 in Acropora pulchra

Genomic Location: ptg000017l:10516468...10526747
NR annotation: XP_044184266.1, peptide chain release factor 1-like isoform X1 [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_023672-T1

ATGCATCATCAGCTTTTCAAAGGACTTAATGTACGGGTTGTTGGGAGTGGTGGGGCCTTTCGCAAGTCATGGTCTCAAATATTGGTCACTGTGACACAAATCAGGTGGAGATCACAATTAATTGAGACCCTTGAGCCTCACTTGAAAAACCTTGTGAAACAGCATGCTGAGATTACCGACAAGTTATCATCAACCGGGGGGGAGATGCCACCTGCAAGCAAAATGAGAGAATTATCTAAACAACTTTCCAAGCTGTCACCTATTGTTCATCTAACAAATCAAATTGAGCAAAAACAAAAGGAAATTCAACAGTTAAATGACCTTATATCAGAGTCAAGTGGAGAGCTTTGGAAAATTGCTGAGGAGGAAAAGCGACAGGCTATAAGTGATAAAAAAGAATTGGAGGATAACTTGCTAACATCCCTTGTTCCTCGGGATGATGATGATGAAAACAATGCTATTTTGGAGCTAAGAGCAGGTACTGGTGGAAAGGAAGCATCTTTGTTCACAAGTGAGATGTTTGTTATGTATCAAAGGTTTGCAGCCTCTAAGAAGTGGAAGTTTGAAATTCTGAACATGAGCAAAAGTGATCAGGGTGGAATTAAGGAAGCAGCTGTTAGCGTGAGTGGAAGTGGCGTGTATGGAATAATGAAGTTTGAAACTGGTGTCCACCGGGTGCAGAGAATTCCTCTGACTGAGACAATGGGTCGCATTCACACCAGCACAATGACAGTGGCAGTCTTGGCACAACCTGAGGAGGTCGATGTAGTAATTGATCCCAAAGATCTTAAAATTGACACATACAGATCTTCAGGAGCTGGAGGTCAGCATGTAAACACAACAGACAGTGCAGTGCGCATTACCCATATACCGACTGGAATAGCCGTTGCTTGTCAAGAGGAAAGGTCCCAAATTAAGAATAAAAGCAGAGCTCTCCAAGTATTGCGAGCGCGGTTGTACGACCTTGAGAGGAAAAAAGTTGATTCAGAGAGAGCTGAAGCCCGCAGAAAGCAGATCGGGGGTGGAGAACGCTCAGAAAAAATCAGAACCTACAATTTTCCACAGGGCCGAGTCACCGACCACAGAATAGGAATGACCATGCAGGGCCTGGAGCTGTTCCTTGATGGCGGAGATAAACTTGACGAACTTATTTGGGCTTTACAGTCACAACATGAAGCCGAAGCTCTTCAGGAACTCACAAGCCAATTTACTACCGGAGCTGGAGAAAAACAACATAGATGACAAAATCTGATAATATTAGAATGCGATGAGTTTGTATTTCATATATCTGTATTCGAGGCGACTCAGGTTTGACTCTGCGCATGTGCTAAAGTTGAGCGATGTATCGATACTTCCTAGAACTTACAACGTGTCTTGCATACGCAAGATTCCAAAGCTTTCACCACAATCCAATTTTCTCAAAATCGTTTTGTTATTAAAATTTTCATCTTCGTTTAGTTGTTTGTAAACGCGTGTCTGTGGCGGTGAAAATAGTTGCCTACGTTATGTTAGGCGGCATCGAAAACAGATATACCCCGTTCACACCAAAGCTCAAACATGTTTAAAACTTGTTTTGATAAACAGATTTAATAAGACTGGCCGTTCACACTGCGGATGCGTTTAAAAAAGCCACTAAAACCATGTTTAAGAAAACTGCCTCATTCAAAATGGCGGCAGAAACGAAAACTCGCGAAGAGTTTGTCAGCACAAAGAAATCTTCCTGTGACTTGAAAAGTGTGGAGACGAAAATATCCAGCTCCAGTTAAAATCATGCGCAAGAAAAAATCCTATGTGGCTAGAAATTGCGCCACATCTTGGAGCTGCAGGCTACGAAGACAGAGACGACGGCAGCTTTAGGACACAAATTCACACCCTGATAAGCGCCTTAGAAGCAATAAAAACAAATGCACCAAAACGGGAAATGCCACACCAAAGAAGAAGCCGGCTTTCTTCGACGAAGTGAACGAGCTTTTGTCGAGCGTTGTTGTCAGCTCTTGTTGTTCGGTGTGAATGGTATGATCATTAATTAAACCTGGTTTCATTAAACGTTGTTTAATTAGACATGTTTTGTTGGTGTGAACGGACCATAAAACGATTTGACAAACTATTTAGTTCAGCAAATTGTGAGGCTCCCAAGTTGTTCGTCAAATAAAACATTTTTTAAAATTTAAACATTCAATTAAAATTAGAATTGGGAGGTGACTAATATTTACTAGATTGTGTTTATTTTTCTCGAATGGAGTCATGATTATTCCGAGTGAATAGTGATCTTTCATTCAAAATCCTATCAAAATCGATGCTAACCAAAACTCGAACAACCCCACTTTTACGAGATGAAATGAAGTGTAAACTTTAATGATTCTTTAGTGCTGAGGGATCCTCGGAATAAAGTATAATATGAAATCATCTTTGCGTCTGC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B3CQD1	Peptide chain release factor 1 OS=Orientia tsutsugamushi (strain Ikeda) OX=334380 GN=prfA PE=3 SV=1
A5CCS8	Peptide chain release factor 1 OS=Orientia tsutsugamushi (strain Boryong) OX=357244 GN=prfA PE=3 SV=1
Q2W6V3	Peptide chain release factor 1 OS=Paramagnetospirillum magneticum (strain ATCC 700264 / AMB-1) OX=342108 GN=prfA PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002637 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00472 all species →	RF-1	RF-1 domain	Family	Interproscan
PF03462 all species →	PCRF	PCRF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004373 all species →	Family	Peptide chain release factor 1	Interproscan
IPR000352 all species →	Domain	Peptide chain release factor class I	Interproscan
IPR005139 all species →	Domain	Peptide chain release factor	Interproscan
IPR045853 all species →	Homologous_superfamily	Peptide chain release factor class I superfamily	Interproscan
IPR050057 all species →	Family	Prokaryotic/Mitochondrial Release Factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43804 all species →	LD18447P	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006415 all species →	Biological Process	translational termination	Interproscan
GO:0016149 all species →	Molecular Function	translation release factor activity, codon specific	Interproscan
GO:0003747 all species →	Molecular Function	translation release factor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02835	prfA, MTRF1, MRF1; peptide chain release factor 1	-	Translation factors	ko03012	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.