Gene detail

Detailed information of FUN_023752-T1 in Dendrogyra cylindrus

Genomic Location: contig_48:2178962...2196148
NR annotation: CAH3162101.1, unnamed protein product [Pocillopora meandrina]
Species Dendrogyra cylindrus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4R3D4	Elongation factor 1-delta OS=Macaca fascicularis OX=9541 GN=EEF1D PE=2 SV=2
P29692	Elongation factor 1-delta OS=Homo sapiens OX=9606 GN=EEF1D PE=1 SV=5
P53787	Elongation factor 1-delta OS=Oryctolagus cuniculus OX=9986 GN=EEF1D PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001854 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00736 all species →	EF1_GNE	EF-1 guanine nucleotide exchange domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001326 all species →	Conserved_site	Translation elongation factor EF1B, beta/delta chains, conserved site	Interproscan
IPR014717 all species →	Homologous_superfamily	Translation elongation factor EF1B/small ribosomal subunit protein bS6	Interproscan
IPR014038 all species →	Domain	Translation elongation factor EF1B, beta/delta subunit, guanine nucleotide exchange domain	Interproscan
IPR036219 all species →	Homologous_superfamily	Translation elongation factor eEF-1beta-like superfamily	Interproscan
IPR018940 all species →	Domain	Elongation factor 1 beta central acidic region, eukaryote	Interproscan
IPR049720 all species →	Family	Translation elongation factor EF1B, beta/delta subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11595 all species →	EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003746 all species →	Molecular Function	translation elongation factor activity	Interproscan
GO:0006414 all species →	Biological Process	translational elongation	Interproscan
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0005853 all species →	Cellular Component	eukaryotic translation elongation factor 1 complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15410	EEF1D; elongation factor 1-delta	-	Translation factors	ko03012	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.