Detailed information of FUN_023759-T1 in Acropora pulchra

Genomic Location: ptg000017l:10851274...10880512
NR annotation: XP_015777439.1, PREDICTED: adhesion G protein-coupled receptor A3-like isoform X2 [Acropora digitifera]
Species Acropora pulchra · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
E7FBY6Adhesion G protein-coupled receptor A2 OS=Danio rerio OX=7955 GN=adgra2 PE=1 SV=2
Q5IXF8Glucagon-like peptide 2 receptor OS=Mus musculus OX=10090 GN=Glp2r PE=2 SV=2
O95838Glucagon-like peptide 2 receptor OS=Homo sapiens OX=9606 GN=GLP2R PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004899 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13855
all species →
LRR_8Leucine rich repeatRepeatInterproscan
PF13927
all species →
Ig_3Immunoglobulin domainDomainInterproscan
PF02793
all species →
HRMHormone receptor domainFamilyInterproscan
PF00002
all species →
7tm_27 transmembrane receptor (Secretin family)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001879
all species →
DomainGPCR, family 2, extracellular hormone receptor domainInterproscan
IPR036179
all species →
Homologous_superfamilyImmunoglobulin-like domain superfamilyInterproscan
IPR032675
all species →
Homologous_superfamilyLeucine-rich repeat domain superfamilyInterproscan
IPR001611
all species →
RepeatLeucine-rich repeatInterproscan
IPR007110
all species →
DomainImmunoglobulin-like domainInterproscan
IPR013783
all species →
Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR003591
all species →
RepeatLeucine-rich repeat, typical subtypeInterproscan
IPR046338
all species →
Homologous_superfamilyGAIN domain superfamilyInterproscan
IPR017981
all species →
DomainGPCR, family 2-like, 7TMInterproscan
IPR036445
all species →
Homologous_superfamilyGPCR family 2, extracellular hormone receptor domain superfamilyInterproscan
IPR051963
all species →
FamilyAdhesion G protein-coupled receptor AInterproscan
IPR003599
all species →
DomainImmunoglobulin subtypeInterproscan
IPR003598
all species →
DomainImmunoglobulin subtype 2Interproscan
IPR000832
all species →
FamilyGPCR, family 2, secretin-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45930
all species →
G-PROTEIN COUPLED RECEPTOR 124-LIKE PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004930
all species →
Molecular FunctionG protein-coupled receptor activityInterproscan
GO:0016020
all species →
Cellular ComponentmembraneInterproscan
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0004888
all species →
Molecular Functiontransmembrane signaling receptor activityInterproscan
GO:0007166
all species →
Biological Processcell surface receptor signaling pathwayInterproscan
GO:0005886
all species →
Cellular Componentplasma membraneInterproscan
GO:0007186
all species →
Biological ProcessG protein-coupled receptor signaling pathwayInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K08462ADGRA3, GPR125; adhesion G protein-coupled receptor A3-G protein-coupled receptorsko04030deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Acropora pulchra tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Acropora pulchra, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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