Gene detail

Detailed information of FUN_023765-T1 in Acropora pulchra

Genomic Location: ptg000017l:10932048...10941102
NR annotation: XP_029209547.2, bactericidal permeability-increasing protein-like [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_023765-T1

CAGTTTCTATTAATTTTGTCCGCCATGGGATCGGGTTGTCCGGCTCTTAAGGCAGCTATGGCGCGTATCTTTGGTCTAAATACGTTCATTGCAGCATTTATTCTCGTGTCAAGCCAAGCTACCAAACCAGGTATTCGTTTTCGCATAACAGACAATGGTTTAAAATACGTTGATTCAATAGCCATTCAGACTCTTGAGAGGAAAGTGAAAACAGCCAAAATACCTGATATATCTGGTGATGCTCACACACCCATCGGACATGTATCCTACTCACTCTCCAGTGTACACTTCAATTCTTTATCCGTCCCCTACTCGACATTGAAAACAAGCGCCAACGTCGGTATTCAGTTCCAGGTCACTGGCGCCTCCACATCGTTGAGTGGGAATTGGCACTATCGAAAGGACTCATGGCCTCATATAAGTGGGGGAGGTAGCTTTGATTTGGATGTCAAAGGGATTAGTGTGACAGTGATAGCAAAATTAGGCGTTGACAGTGGCGGTCATCCCAGTATTGCTTCCGCCAGTTGCTCAAGTTCAATAGGAGATGTGAGCATTCATTTTCATGGAGGTGCAAGTTGGCTGTATAATCTTTTCGATCACTACATTGATGGCAAAATAAAGGGGGTGTTGCAAGACAAGTTATGCGCGGAGACGTCAGATCTTATTGACACTGACGCTGAGAAGGCACTAGCAACGTTTCCAGTTCAAAAGCGAATTGACAAATATGCTGTCATAAACTATGCTCTGGTTTCAAGCCCCAACTTCACTCAAACGTTCGCAGACGTTTTTATTAAGGGAGAATTTTTGTCTGCCATTTCTCCAAGAGAACCTCCGTTCTCCCCTTCATTATTACCATTCGAATCAGAATCAGACAAGATGGTCTATGTATGGTTGACTGACTACGTTGCCAATACAGCTGGGTTTGTATATCAATCAGCTGGTGTGCTGAACGAAACAATCACTCCATCCATGCTTCCTCCAAATTTTTCCTACCCATTAAACACGAATACCGTTAAACTGATCATTCCAAAGCTTTATGCTTTGTATCCAAACATGCCGATGAAACTGGAAGCATACTCCACGCAAAGACCACAGATCTCCACGACCTCTGCAGGTCTGAGCCTGTTAATCGAAGGTCAAGTGCAGTGCTATGTACAACTGAAAAATGGTTCATATGTGTATACCCTCACTATGGGAACGAATATTTCTTCCCTTGCAAAAGTTGGTGTCAAGGATGGCAACATCACCGCACACGTGAATTCGGTCAAGATAGAAGTAAAGTTAATCGATTCAGCCATCGGGAAGATTTCGATTGAAACGAAGCTTCTTCAGTTTCTTTTGGATGCATTTGCGGACAGAATAATTGTCAACCAACTGAACAAAATTGCTGAGGTGGGATTTCCTCTGCCAATGGTGGACGGTATACAGATAATGAATGCGGAAGTGATGTCTGGCCAGGGCTTTAACCTGGTGGCAGCAGATATCAAATACGAACCTACCAAGACTGAAACCGAGCGCGGAATGAACAAGATTGTCATAGTTTAGCAAAGCAAATTGTTCCCCAGTATAATTAATGTTGAGCCTCTAATATTCAAGTGACCAAGCAGTTAACCAGAATCAACCTGATCTCGGAAATTAATTCTAGAAGAATTTTATTCCCCCCATTCCCCTCTGTTTTTGAAGTAACTTAGACCCCGGGAATGGAAGTATGCTTGTTTTTATAAACTAAGGACGTTTTTTCAAAAATGTATTTTATGCCGTGAATCCCACTTTTTTTCTGATTTCTTATTAGATAAGACCATGCCATAGTCTCTCTTTATAGATGCTAAATGCTGACTTTATTGCGTTGTTGTTTGTTTGTTTTCCAACATTTTTACCCTTCACCGAATTACAAAATGAAATAAAACAAAACATGAGAATGCCTCAAGGCCTTTAAAAGCTTGTCTGGTGAATATGGTTATTTTTTAATCCTACGTAAGAGAACTGTAGCAGTTAAAGAATAAAGCTTCCCAAAGTTCTTCAATTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P17453	Bactericidal permeability-increasing protein OS=Bos taurus OX=9913 GN=BPI PE=2 SV=2
Q2TBI0	Lipopolysaccharide-binding protein OS=Bos taurus OX=9913 GN=LBP PE=2 SV=1
A0A481NSZ4	Bactericidal permeability-increasing protein OS=Sebastes schlegelii OX=214486 GN=BPI PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001735 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01273 all species →	LBP_BPI_CETP	LBP / BPI / CETP family, N-terminal domain	Family	Interproscan
PF02886 all species →	LBP_BPI_CETP_C	LBP / BPI / CETP family, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017942 all species →	Domain	Lipid-binding serum glycoprotein, N-terminal	Interproscan
IPR017943 all species →	Homologous_superfamily	Bactericidal permeability-increasing protein, alpha/beta domain superfamily	Interproscan
IPR032942 all species →	Family	BPI/LBP/Plunc family	Interproscan
IPR030675 all species →	Family	Lipid binding protein BPI/LBP	Interproscan
IPR001124 all species →	Domain	Lipid-binding serum glycoprotein, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10504 all species →	BACTERICIDAL PERMEABILITY-INCREASING BPI PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008289 all species →	Molecular Function	lipid binding	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25374	BPI; bactericidal permeability-increasing protein	-	Others	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.